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Via molecular dynamics simulations we have studied kinetics of vapor-"solid" phase transition in an active matter model in which self-propulsion is introduced via the well-known Vicsek rule. The overall density of the particles is chosen in…

Soft Condensed Matter · Physics 2020-11-05 Subhajit Paul , Arabinda Bera , Subir K. Das

We study the dynamics of quasi-two-dimensional concentrated suspensions of colloidal particles in active gels by computer simulations. Remarkably, we find that activity induces a dynamic clustering of colloids even in the absence of any…

Soft Condensed Matter · Physics 2019-10-11 G. Foffano , J. S. Lintuvuori , K. Stratford , M. E. Cates , D. Marenduzzo

We consider numerical algorithms for the simulation of the rheology of two-dimensional vesicles suspended in a viscous Stokesian fluid. The vesicle evolution dynamics is governed by hydrodynamic and elastic forces. The elastic forces are…

Numerical Analysis · Mathematics 2015-06-17 Bryan Quaife , George Biros

Engineering synthetic materials that mimic the remarkable complexity of living organisms is a fundamental challenge in science and technology. We study the spatiotemporal patterns that emerge when an active nematicfilm of microtubules and…

We elucidate the molecular forces leading to assembly of two dimensional membrane-like structures composed of a one rod-length thick monolayer of aligned rods from an immiscible suspension of hard rods and depleting polymers. We perform…

Soft Condensed Matter · Physics 2011-03-15 Yasheng Yang , Edward Barry , Zvonimir Dogic , Michael F. Hagan

We derive macroscopic dynamics for self-propelled particles in a fluid. The starting point is a coupled Vicsek-Stokes system. The Vicsek model describes self-propelled agents interacting through alignment. It provides a phenomenological…

Fluid Dynamics · Physics 2017-06-20 Pierre Degond , Sara Merino-Aceituno , Fabien Vergnet , Hui Yu

In the last years self-motile droplets attracted the attention of scientists from different fields ranging from applied biology to theoretical physics, because of their promising technological applications and important biological…

Soft Condensed Matter · Physics 2023-03-31 L. N. Carenza , G. Gonnella , G. Negro

We have simulated the dynamics of a 2D gas of hard needles by event-oriented molecular dynamics. Various quantities namely translational and rotational diffusion constants and intermediate self scattering function have been explored and…

Soft Condensed Matter · Physics 2011-05-12 M. Ebrahim Foulaadvand , Mohsen Yarifard

Active agents - like phoretic particles, bacteria, sperm, and cytoskeletal filaments in motility assays - show a large variety of motility-induced collective behaviors, such as aggregation, clustering and phase separation. The behavior of…

Soft Condensed Matter · Physics 2018-08-21 Clara Abaurrea Velasco , Masoud Abkenar , Gerhard Gompper , Thorsten Auth

We study numerically the phases and dynamics of a dense collection of self-propelled particles with soft repulsive interactions in two dimensions. The model is motivated by recent in vitro experiments on confluent monolayers of migratory…

Soft Condensed Matter · Physics 2015-05-28 Silke Henkes , Yaouen Fily , M. Cristina Marchetti

Motivated by various recent experimental findings, we propose a dynamical model of intermittently self-propelled particles: active particles that recurrently switch between two modes of motion, namely an active run-state and a turn state,…

Soft Condensed Matter · Physics 2025-10-30 Agniva Datta , Carsten Beta , Robert Großmann

We study the spatio-temporal dynamics of a model of polar active fluid in two dimensions. The system exhibits a transition from an isotropic to a polarized state as a function of density. The uniform polarized state is, however, unstable…

Soft Condensed Matter · Physics 2011-12-08 Luca Giomi , M. Cristina Marchetti

Using agent-based simulations of self-propelled particles subject to short-range repulsion and nematic alignment we explore the dynamical phases of a dense active material confined to the surface of a sphere. We map the dynamical phase…

Soft Condensed Matter · Physics 2018-04-25 Silke Henkes , M. Cristina Marchetti , Rastko Sknepnek

Systems of self-propelled particles are known for their tendency to aggregate and to display swarm behavior. We investigate two model systems, self-propelled rods interacting via volume exclusion, and sinusoidally-beating flagella embedded…

Biological Physics · Physics 2010-09-28 Yingzi Yang , Vincent Marceau , Gerhard Gompper

Random packings of stiff rods are self-supporting mechanical structures stabilized by long range interactions induced by contacts. To understand the geometrical and topological complexity of the packings, we first deploy X-ray computerized…

Soft Condensed Matter · Physics 2024-09-24 Yeonsu Jung , Thomas Plumb-Reyes , Hao-Yu Greg Lin , L. Mahadevan

We consider a coupled system consisting of a kinetic equation coupled to a macroscopic Stokes (or Navier-Stokes) equation and describing the motion of a suspension of rigid rods in gravity. A reciprocal coupling leads to the formation of…

Fluid Dynamics · Physics 2015-10-13 Christiane Helzel , Athanasios E. Tzavaras

Motivated by recent experimental and computational results that show a motility-induced clustering transition in self-propelled particle systems, we study an individual model and its corresponding Self-Organized Hydrodynamic model for…

Adaptation and Self-Organizing Systems · Physics 2016-02-22 Pierre Degond , Silke Henkes , Hui Yu

We present a geometric design rule for size-controlled clustering of self-propelled particles. We show that active particles that tend to rotate under an external force have an intrinsic, signed parameter with units of curvature which we…

With a toppling rule which generates metastable sites, we explore the properties of a gradient-driven sandpile that is minimally perturbed at one boundary. In two dimensions we find that the transport of grains takes place along deep…

Statistical Mechanics · Physics 2009-11-07 Lucian Anton , Hendrik B. Geyer

Many types of mammalian cells exert active contractile forces and mechanically deform their elastic substrate, to accomplish biological functions such as cell migration. These substrate deformations provide a mechanism by which cells can…

Soft Condensed Matter · Physics 2022-02-22 Subhaya Bose , Patrick S. Noerr , Ajay Gopinathan , Arvind Gopinath , Kinjal Dasbiswas