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Large-scale genomic workflows used in precision medicine can process datasets spanning tens to hundreds of gigabytes per sample, leading to high memory spikes, intensive disk I/O, and task failures due to out-of-memory errors. Simple static…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-21 Daniel Mas Montserrat , Ray Verma , Míriam Barrabés , Francisco M. de la Vega , Carlos D. Bustamante , Alexander G. Ioannidis

Real-time end-to-end task scheduling in networked control systems (NCSs) requires the joint consideration of both network and computing resources to guarantee the desired quality of service (QoS). This paper introduces a new model for…

Networking and Internet Architecture · Computer Science 2022-10-21 Peng Wu , Chenchen Fu , Tianyu Wang , Minming Li , Yingchao Zhao , Chun Jason Xue , Song Han

Remote memory techniques for datacenter applications have recently gained a great deal of popularity. Existing remote memory techniques focus on the efficiency of a single application setting only. However, when multiple applications co-run…

Operating Systems · Computer Science 2022-10-13 Chenxi Wang , Yifan Qiao , Haoran Ma , Shi Liu , Yiying Zhang , Wenguang Chen , Ravi Netravali , Miryung Kim , Guoqing Harry Xu

Most state of the art exploratory data analysis frameworks fall into one of the two extremes: they either focus on the high-performance computational, or on the interactive and open-ended aspects of the analysis. Arkouda is a framework that…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-11-22 Prashanth Pai , Andrej Jakovljević , Zoran Budimlić , Costin Iancu

Optimization of discrete structures aims at generating a new structure with the better property given an existing one, which is a fundamental problem in machine learning. Different from the continuous optimization, the realistic…

Machine Learning · Computer Science 2021-10-05 Xianggen Liu , Pengyong Li , Fandong Meng , Hao Zhou , Huasong Zhong , Jie Zhou , Lili Mou , Sen Song

Memory approximation techniques are commonly limited in scope, targeting individual levels of the memory hierarchy. Existing approximation techniques for a full memory hierarchy determine optimal configurations at design-time provided a…

Hardware Architecture · Computer Science 2020-11-18 Biswadip Maity , Bryan Donyanavard , Anmol Surhonne , Amir Rahmani , Andreas Herkersdorf , Nikil Dutt

As software may be used by multiple users, caching popular software at the wireless edge has been considered to save computation and communications resources for mobile edge computing (MEC). However, fetching uncached software from the core…

Information Theory · Computer Science 2020-05-07 Wanli Wen , Ying Cui , Tony Q. S. Quek , Fu-Chun Zheng , Shi Jin

Countless applications cast their computational core in terms of dense linear algebra operations. These operations can usually be implemented by combining the routines offered by standard linear algebra libraries such as BLAS and LAPACK,…

Performance · Computer Science 2014-10-01 Elmar Peise , Paolo Bientinesi

Recurrent Neural Network (RNN) applications form a major class of AI-powered, low-latency data center workloads. Most execution models for RNN acceleration break computation graphs into BLAS kernels, which lead to significant inter-kernel…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-10-01 Tian Zhao , Yaqi Zhang , Kunle Olukotun

Heterogeneous computing is becoming mainstream in all scopes. This new era in computer architecture brings a new paradigm called Accelerator Level Parallelism (ALP). In ALP, accelerators are used concurrently to provide unprecedented levels…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-22 Pablo Antonio Martínez , Gregorio Bernabé , Jose Manuel García

Sparse General Matrix Multiply (SpGEMM) is key for various High-Performance Computing (HPC) applications such as genomics and graph analytics. Using the semiring abstraction, many algorithms can be formulated as SpGEMM, allowing…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-23 Thomas McFarland , Julian Bellavita , Giulia Guidi

Approximate nearest neighbour (ANN) search has become a central task in modern data-intensive applications, particularly when operating on large, heterogeneous, or high-dimensional datasets. However, many existing ANN methods struggle in…

Information Retrieval · Computer Science 2026-01-15 Elena Garcia-Morato , Maria Jesus Algar , Cesar Alfaro , Felipe Ortega , Javier Gomez , Javier M. Moguerza

There is a trend towards increased specialization of data management software for performance reasons. In this paper, we study the automatic specialization and optimization of database application programs -- sequences of queries and…

This paper provides an in-depth characterization of GPU-accelerated systems, to understand the interplay between overlapping computation and communication which is commonly employed in distributed training settings. Due to the large size of…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-08 Seonho Lee , Jihwan Oh , Junkyum Kim , Seokjin Go , Jongse Park , Divya Mahajan

Data movement is the dominating factor affecting performance and energy in modern computing systems. Consequently, many algorithms have been developed to minimize the number of I/O operations for common computing patterns. Matrix…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-26 Johannes de Fine Licht , Grzegorz Kwasniewski , Torsten Hoefler

Plenty of research efforts have been devoted to FPGA-based acceleration, due to its low latency and high energy efficiency. However, using the original low-level hardware description languages like Verilog to program FPGAs requires…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-20 Ruoshi Li , Hongjing Huang , Zeke Wang , Zhiyuan Shao , Xiaofei Liao , Hai Jin

Planning in code is considered a more reliable approach for many orchestration tasks. This is because code is more tractable than steps generated via Natural Language and make it easy to support more complex sequences by abstracting…

Software Engineering · Computer Science 2024-08-19 Nastaran Bassamzadeh , Chhaya Methani

This article presents an automatic approach to quickly derive a good solution for hardware resource partition and task granularity for task-based parallel applications on heterogeneous many-core architectures. Our approach employs a…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-10 Peng Zhang , Jianbin Fang , Canqun Yang , Chun Huang , Tao Tang , Zheng Wang

Stencils represent a class of computational patterns where an output grid point depends on a fixed shape of neighboring points in an input grid. Stencil computations are prevalent in scientific applications engaging a significant portion of…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-24 Jesmin Jahan Tithi , Fabrizio Petrini , Hongbo Rong , Andrei Valentin , Carl Ebeling

We study the distributed computing setting in which there are multiple servers, each holding a set of points, who wish to compute functions on the union of their point sets. A key task in this setting is Principal Component Analysis (PCA),…

Machine Learning · Computer Science 2014-12-24 Maria-Florina Balcan , Vandana Kanchanapally , Yingyu Liang , David Woodruff