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Large language models (LLMs) have shown considerable promise in clinical natural language processing, yet few domain-specific datasets exist to rigorously evaluate their performance on radiology tasks. In this work, we introduce an…

Computation and Language · Computer Science 2025-11-18 Namu Park , Giridhar Kaushik Ramachandran , Kevin Lybarger , Fei Xia , Ozlem Uzuner , Meliha Yetisgen , Martin Gunn

In modern electronic medical records (EMR) much of the clinically important data - signs and symptoms, symptom severity, disease status, etc. - are not provided in structured data fields, but rather are encoded in clinician generated…

Computation and Language · Computer Science 2014-08-10 Son Doan , Mike Conway , Tu Minh Phuong , Lucila Ohno-Machado

The goal of this research was to find a way to extend the capabilities of computers through the processing of language in a more human way, and present applications which demonstrate the power of this method. This research presents a novel…

Computation and Language · Computer Science 2013-01-17 Benjamin Englard

Natural Language Processing (NLP) is widely used to support the automation of different Requirements Engineering (RE) tasks. Most of the proposed approaches start with various NLP steps that analyze requirements statements, extract their…

Software Engineering · Computer Science 2022-06-15 Riad Sonbol , Ghaida Rebdawi , Nada Ghneim

Clinical natural language processing (NLP) models have shown promise for supporting hospital discharge planning by leveraging narrative clinical documentation. However, note-based models are particularly vulnerable to temporal and lexical…

Computation and Language · Computer Science 2026-02-20 Ha Na Cho , Sairam Sutari , Alexander Lopez , Hansen Bow , Kai Zheng

Rapid and accurate identification of Venous thromboembolism (VTE), a severe cardiovascular condition including deep vein thrombosis (DVT) and pulmonary embolism (PE), is important for effective treatment. Leveraging Natural Language…

Language models (LMs), including large language models (such as ChatGPT), have the potential to assist clinicians in generating various clinical notes. However, LMs are prone to produce ``hallucinations'', i.e., generated content that is…

Computation and Language · Computer Science 2024-07-23 Fenglin Liu , Bang Yang , Chenyu You , Xian Wu , Shen Ge , Zhangdaihong Liu , Xu Sun , Yang Yang , David A. Clifton

Data citations provide a foundation for studying research data impact. Collecting and managing data citations is a new frontier in archival science and scholarly communication. However, the discovery and curation of research data citations…

Digital Libraries · Computer Science 2022-03-11 Lizhou Fan , Sara Lafia , David Bleckley , Elizabeth Moss , Andrea Thomer , Libby Hemphill

While automatic monitoring and coaching of exercises are showing encouraging results in non-medical applications, they still have limitations such as errors and limited use contexts. To allow the development and assessment of physical…

Machine Learning · Computer Science 2025-01-14 Sao Mai Nguyen , Maxime Devanne , Olivier Remy-Neris , Mathieu Lempereur , André Thepaut

Multi-step planning has been widely employed to enhance the performance of large language models (LLMs) on downstream natural language processing (NLP) tasks, which decomposes the original task into multiple subtasks and guide LLMs to solve…

Computation and Language · Computer Science 2025-05-20 Zepeng Ding , Dixuan Wang , Ziqin Luo , Guochao Jiang , Deqing Yang , Jiaqing Liang

Effective patient-provider communication is crucial in clinical care, directly impacting patient outcomes and quality of life. Traditional evaluation methods, such as human ratings, patient feedback, and provider self-assessments, are often…

Computation and Language · Computer Science 2024-09-25 Zhiyuan Wang , Fangxu Yuan , Virginia LeBaron , Tabor Flickinger , Laura E. Barnes

Information Retrieval (IR) is an important application area of Natural Language Processing (NLP) where one encounters the genuine challenge of processing large quantities of unrestricted natural language text. While much effort has been…

cmp-lg · Computer Science 2008-02-03 Chengxiang Zhai

We describe an annotation initiative to capture the scholarly contributions in natural language processing (NLP) articles, particularly, for the articles that discuss machine learning (ML) approaches for various information extraction…

Computation and Language · Computer Science 2020-09-04 Jennifer D'Souza , Sören Auer

De-identification is the process of removing 18 protected health information (PHI) from clinical notes in order for the text to be considered not individually identifiable. Recent advances in natural language processing (NLP) has allowed…

Computation and Language · Computer Science 2018-10-04 Kaung Khin , Philipp Burckhardt , Rema Padman

Despite the observable benefit of Natural Language Processing (NLP) in processing a large amount of textual medical data within a limited time for information retrieval, a handful of research efforts have been devoted to uncovering novel…

Computation and Language · Computer Science 2024-06-04 Md Taimur Ahad

Pre-training and fine-tuning have achieved significant advances in the information retrieval (IR). A typical approach is to fine-tune all the parameters of large-scale pre-trained models (PTMs) on downstream tasks. As the model size and the…

Information Retrieval · Computer Science 2022-08-23 Xinyu Ma , Jiafeng Guo , Ruqing Zhang , Yixing Fan , Xueqi Cheng

Natural language processing (NLP) is becoming an important means for automatic recognition of human traits and states, such as intoxication, presence of psychiatric disorders, presence of airway disorders and states of stress. Such…

Computation and Language · Computer Science 2021-06-03 Joppe Wouts , Janna de Boer , Alban Voppel , Sanne Brederoo , Sander van Splunter , Iris Sommer

Detecting protein-protein interactions (PPIs) is crucial for understanding genetic mechanisms, disease pathogenesis, and drug design. However, with the fast-paced growth of biomedical literature, there is a growing need for automated and…

Computation and Language · Computer Science 2023-12-14 Hasin Rehana , Nur Bengisu Çam , Mert Basmaci , Jie Zheng , Christianah Jemiyo , Yongqun He , Arzucan Özgür , Junguk Hur

Objective: There is a lot of information about cancer in Electronic Health Record (EHR) notes that can be useful for biomedical research provided natural language processing (NLP) methods are available to extract and structure this…

Quantitative Methods · Quantitative Biology 2019-04-04 Surabhi Datta , Elmer V Bernstam , Kirk Roberts

The NWO Priority Programme Language and Speech Technology is a 5-year research programme aiming at the development of spoken language information systems. In the Programme, two alternative natural language processing (NLP) modules are…

Computation and Language · Computer Science 2007-05-23 Gert Veldhuijzen van Zanten , Gosse Bouma , Khalil Sima'an , Gertjan van Noord , Remko Bonnema