Related papers: Combinatorial Parameterized Algorithms for Chemica…
The problem of determining whether a graph $G$ contains another graph $H$ as a minor, referred to as the minor containment problem, is a fundamental problem in the field of graph algorithms. While it is NP-complete when $G$ and $H$ are…
An $h$-queue layout of a graph $G$ consists of a linear order of its vertices and a partition of its edges into $h$ queues, such that no two independent edges of the same queue nest. The minimum $h$ such that $G$ admits an $h$-queue layout…
We present two new combinatorial tools for the design of parameterized algorithms. The first is a simple linear time randomized algorithm that given as input a $d$-degenerate graph $G$ and an integer $k$, outputs an independent set $Y$,…
We present fixed parameter tractable algorithms for the conflict-free coloring problem on graphs. Given a graph $G=(V,E)$, \emph{conflict-free coloring} of $G$ refers to coloring a subset of $V$ such that for every vertex $v$, there is a…
In this paper, we obtain polynomial time algorithms to determine the acyclic chromatic number, the star chromatic number, the Thue chromatic number, the harmonious chromatic number and the clique chromatic number of $P_4$-tidy graphs and…
We study the parameterized complexity of various classic vertex-deletion problems such as Odd cycle transversal, Vertex planarization, and Chordal vertex deletion under hybrid parameterizations. Existing FPT algorithms for these problems…
This paper tackles the task of storing a large collection of vectors, such as visual descriptors, and of searching in it. To this end, we propose to approximate database vectors by constrained sparse coding, where possible atom weights are…
Dynamic programming on various graph decompositions is one of the most fundamental techniques used in parameterized complexity. Unfortunately, even if we consider concepts as simple as path or tree decompositions, such dynamic programming…
Quantum-chemical fragmentation methods offer an efficient approach for the treatment of large proteins, in particular if local target quantities such as protein--ligand interaction energies, enzymatic reaction energies, or spectroscopic…
Computational predictions of mass spectra from molecules have enabled the discovery of clinically relevant metabolites. However, such predictive tools are still limited as they occupy one of two extremes, either operating (a) by fragmenting…
We initiate the study of the parameterized complexity of the {\sc Collective Graph Exploration} ({\sc CGE}) problem. In {\sc CGE}, the input consists of an undirected connected graph $G$ and a collection of $k$ robots, initially placed at…
We show that for a number of parameterized problems for which only $2^{O(k)} n^{O(1)}$ time algorithms are known on general graphs, subexponential parameterized algorithms with running time $2^{O(k^{1-\frac{1}{1+\delta}} \log^2 k)}…
Structural decomposition methods have been developed for identifying tractable classes of instances of fundamental problems in databases, such as conjunctive queries and query containment, of the constraint satisfaction problem in…
We present an exact algorithm for computing all common subgraphs with the maximum number of vertices across multiple graphs. Our approach is further extended to handle the connected Maximum Common Subgraph (MCS), identifying the largest…
We propose an algorithm whose input are parameters $k$ and $r$ and a hypergraph $H$ of rank at most $r$. The algorithm either returns a tree decomposition of $H$ of generalized hypertree width at most $4k$ or 'NO'. In the latter case, it is…
We investigate exact crossing minimization for graphs that differ from trees by a small number of additional edges, for several variants of the crossing minimization problem. In particular, we provide fixed parameter tractable algorithms…
Several problems that are NP-hard on general graphs are efficiently solvable on graphs with bounded treewidth. Efforts have been made to generalize treewidth and the related notion of pathwidth to digraphs. Directed treewidth, DAG-width and…
We improve the running time of the general algorithmic technique known as Baker's approach (1994) on H-minor-free graphs from O(n^{f(|H|)}) to O(f(|H|) n^{O(1)}). The numerous applications include e.g. a 2-approximation for coloring and…
A graph on $n$ vertices is equitably $k$-colorable if it is $k$-colorable and every color is used either $\left\lfloor n/k \right\rfloor$ or $\left\lceil n/k \right\rceil$ times. Such a problem appears to be considerably harder than vertex…
Our work is motivated by the challenges presented in preparing arrays of atoms for use in quantum simulation. The recently-developed process of loading atoms into traps results in approximately half of the traps being filled. To consolidate…