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Multiple lines of evidence strongly suggest that infection hotspots, where a single individual infects many others, play a key role in the transmission dynamics of COVID-19. However, most of the existing epidemiological models fail to…

I present three types of applications of generalized additive models (GAMs) to COVID-19 mortality rates in the US for the purpose of advancing methods to document inequities with respect to which communities suffered disproportionate…

Applications · Statistics 2022-12-01 Christian Testa

Affective Computing has recently attracted the attention of the research community, due to its numerous applications in diverse areas. In this context, the emergence of video-based data allows to enrich the widely used spatial features with…

Computer Vision and Pattern Recognition · Computer Science 2021-02-19 Decky Aspandi , Federico Sukno , Björn Schuller , Xavier Binefa

The COVID-19 pandemic has presented unprecedented challenges worldwide, necessitating effective modelling approaches to understand and control its transmission dynamics. In this study, we propose a novel approach that integrates…

Populations and Evolution · Quantitative Biology 2025-01-14 Moein Khalighi , Leo Lahti , Faïçal Ndaïrou , Peter Rashkov , Delfim F. M. Torres

Recently, the outbreak of the novel Coronavirus disease 2019 (COVID-19) pandemic has seriously endangered human health and life. Due to limited availability of test kits, the need for auxiliary diagnostic approach has increased. Recent…

Image and Video Processing · Electrical Eng. & Systems 2021-09-07 Xiao Qi , Lloyd Brown , David J. Foran , Ilker Hacihaliloglu

COVID-19 is highly transmissible and containing outbreaks requires a rapid and effective response. Because infection may be spread by people who are pre-symptomatic or asymptomatic, substantial undetected transmission is likely to occur…

Multimodal data modeling has emerged as a powerful approach in clinical research, enabling the integration of diverse data types such as imaging, genomics, wearable sensors, and electronic health records. Despite its potential to improve…

In this paper, we develop a method to estimate the infection-rate of a disease, over a region, as a field that varies in space and time. To do so, we use time-series of case-counts of symptomatic patients as observed in the areal units that…

Applications · Statistics 2024-06-19 Cosmin Safta , Wyatt Bridgman , Jaideep Ray

Biomedical research has revealed the crucial role of miRNAs in the progression of many diseases, and computational prediction methods are increasingly proposed for assisting biological experiments to verify miRNA-disease associations…

Computational Engineering, Finance, and Science · Computer Science 2023-08-29 Yi Zhou , Meixuan Wu , Chengzhou Ouyang , Min Zhu

Throughout the COVID-19 pandemic, government policy and healthcare implementation responses have been guided by reported positivity rates and counts of positive cases in the community. The selection bias of these data calls into question…

Applications · Statistics 2021-04-12 Len Covello , Andrew Gelman , Yajuan Si , Siquan Wang

This paper demonstrates how to use generative models trained for image synthesis as tools for visual data mining. Our insight is that since contemporary generative models learn an accurate representation of their training data, we can use…

Computer Vision and Pattern Recognition · Computer Science 2024-08-07 Ioannis Siglidis , Aleksander Holynski , Alexei A. Efros , Mathieu Aubry , Shiry Ginosar

Epidemic propagation on networks represents an important departure from traditional massaction models. However, the high-dimensionality of the exact models poses a challenge to both mathematical analysis and parameter inference. By using…

Quantitative Methods · Quantitative Biology 2023-02-07 István Z. Kiss , Luc Berthouze , Wasiur R. KhudaBukhsh

Technological developments and open data policies have made large, global environmental datasets accessible to everyone. For analysing such datasets, including spatiotemporal correlations using traditional models based on Gaussian processes…

Computation · Statistics 2020-07-01 Marius Appel , Edzer Pebesma

There is growing recognition in both the experimental and modelling literature of the importance of spatial structure to the dynamics of viral infections in tissues. Aided by the evolution of computing power and motivated by recent…

Quantitative Methods · Quantitative Biology 2025-07-08 Thomas Williams , James M. McCaw , James M. Osborne

Medical diagnostic image analysis (e.g., CT scan or X-Ray) using machine learning is an efficient and accurate way to detect COVID-19 infections. However, sharing diagnostic images across medical institutions is usually not allowed due to…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-27 Weishan Zhang , Tao Zhou , Qinghua Lu , Xiao Wang , Chunsheng Zhu , Haoyun Sun , Zhipeng Wang , Sin Kit Lo , Fei-Yue Wang

In the post-pandemic era of COVID-19, hospitalization remains a primary public health concern and wastewater surveillance has become an important tool for monitoring its dynamics at the level of community. However, there is usually no…

Methodology · Statistics 2026-01-14 K. Ken Peng , Charmaine B. Dean , Robert Delatolla , X. Joan Hu , Elizabeth Renouf

Deep neural networks are a family of computational models that have led to a dramatical improvement of the state of the art in several domains such as image, voice or text analysis. These methods provide a framework to model complex,…

Machine Learning · Statistics 2018-02-12 Louis Falissard , Guy Fagherazzi , Newton Howard , Bruno Falissard

Since the start of the still ongoing COVID-19 pandemic, there have been many modeling efforts to assess several issues of importance to public health. In this work, we review the theory behind some important mathematical models that have…

Populations and Evolution · Quantitative Biology 2022-01-06 Fernando Saldaña , Jorge X Velasco-Hernández

Temporal event data are collected across a broad range of domains, and a variety of visual analytics techniques have been developed to empower analysts working with this form of data. These techniques generally display aggregate statistics…

Human-Computer Interaction · Computer Science 2019-11-13 David Gotz , Jonathan Zhang , Wenyuan Wang , Joshua Shrestha , David Borland

Multi-view medical image analysis often depends on the combination of information from multiple views. However, differences in perspective or other forms of misalignment can make it difficult to combine views effectively, as registration is…

Computer Vision and Pattern Recognition · Computer Science 2021-09-24 Gijs van Tulder , Yao Tong , Elena Marchiori
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