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Topological techniques have become a popular tool for studying information flows in neural networks. In particular, simplicial homology theory is used to analyze how cognitive representations of space emerge from large conglomerates of…

Neurons and Cognition · Quantitative Biology 2025-02-19 Andrey Babichev , Vladimir Vashin , Yuri Dabaghian

The Laplace operator encodes the behavior of physical systems at vastly different scales, describing heat flow, fluids, as well as electric, gravitational, and quantum fields. A key input for the Laplace equation is the curvature of space.…

We consider problems of dimensionality reduction and learning data representations for continuous spaces with two or more independent degrees of freedom. Such problems occur, for example, when observing shapes with several components that…

Machine Learning · Computer Science 2021-05-31 Sharon Zhang , Amit Moscovich , Amit Singer

We develop wavelet representations for edge-flows on simplicial complexes, using ideas rooted in combinatorial Hodge theory and spectral graph wavelets. We first show that the Hodge Laplacian can be used in lieu of the graph Laplacian to…

Signal Processing · Electrical Eng. & Systems 2022-07-28 T. Mitchell Roddenberry , Florian Frantzen , Michael T. Schaub , Santiago Segarra

When analyzing cell trajectories, we often have to deal with noisy data due to the random motion of the cells and possible imperfections in cell center detection. To smooth these trajectories, we present a mathematical model and numerical…

Numerical Analysis · Mathematics 2023-04-04 Giulia Lupi , Karol Mikula , Seol Ah Park

The hippocampus supports spatial navigation by encoding cognitive maps through collective place cell activity. We model the place cell population as non-negative spatial embeddings derived from the spectral decomposition of multi-step…

Neurons and Cognition · Quantitative Biology 2025-10-28 Minglu Zhao , Dehong Xu , Deqian Kong , Wen-Hao Zhang , Ying Nian Wu

Complex systems are often decomposed into modular subsystems for engineering tractability. Although various equation based white-box modeling techniques make use of such structure, learning based methods have yet to incorporate these ideas…

Machine Learning · Computer Science 2022-10-31 Jayesh K. Gupta , Sai Vemprala , Ashish Kapoor

We develop a Bayesian nonparametric framework for inference in spatio-temporal Hawkes processes, extending existing theoretical results beyond the purely temporal setting. Our framework encompasses modelling both the background and…

Statistics Theory · Mathematics 2026-01-08 Xenia Miscouridou , Deborah Sulem

The subject of this paper is the evolution of the concept of information processing in regular structures based on multi-level processing in nested cellular automata. The essence of the proposed model is a discrete space-time containing…

Neural and Evolutionary Computing · Computer Science 2022-10-13 Jerzy Szynka

We develop a new family of marked point processes by focusing the characteristic properties of marked Hawkes processes exclusively to the space of marks, providing the freedom to specify a different model for the occurrence times. This is…

Applications · Statistics 2022-10-18 Santhosh Narayanan , Ioannis Kosmidis , Petros Dellaportas

The aim in this note is to define an algorithm to carry out minimal curvature spherical harmonics interpolation, which is then used to calculate the Laplacian for multi-electrode EEG data analysis. The approach taken is to respect the data.…

Medical Physics · Physics 2007-05-23 Giulio Ruffini , Josep Marco , Carles Grau

We study the existence of the product of two weighted modulation spaces. For this purpose we discuss two different strategies. The more simple one allows transparent proofs in various situations. However, our second method allows a closer…

Functional Analysis · Mathematics 2016-02-02 Maximilian Reich , Winfried Sickel

We introduce a modal representation for Lagrangian trajectories in turbulence, termed Lagrangian Proper Orthogonal Decomposition (LPOD). An ensemble of particle trajectories is used to construct velocity time series, which are normalized…

Fluid Dynamics · Physics 2026-04-27 Ron Shnapp , Stefano Brizzolara

We introduce a general-purpose framework for interconnecting scientific simulation programs using a homogeneous, unified interface. Our framework is intrinsically parallel, and conveniently separates all component numerical modules in…

Instrumentation and Methods for Astrophysics · Physics 2015-06-04 Simon Portegies Zwart , Steve McMillan , Arjen van Elteren , Inti Pelupessy , Nathan de Vries

We consider the well-studied problem of decomposing a vector time series signal into components with different characteristics, such as smooth, periodic, nonnegative, or sparse. We describe a simple and general framework in which the…

Machine Learning · Computer Science 2022-09-21 Bennet E. Meyers , Stephen P. Boyd

Eigenanalysis of differential operators, such as the Laplace operator or elastic energy Hessian, is typically restricted to a single shape and its discretization, limiting reduced order modeling (ROM). We introduce the first eigenanalysis…

Graphics · Computer Science 2025-05-14 Yue Chang , Otman Benchekroun , Maurizio M. Chiaramonte , Peter Yichen Chen , Eitan Grinspun

Composition is a powerful principle for systems biology, focused on the interfaces, interconnections, and orchestration of distributed processes to enable integrative multiscale simulations. Whereas traditional models focus on the structure…

Other Quantitative Biology · Quantitative Biology 2024-11-25 Eran Agmon

Biological cells are the prototypical example of active matter. Cells sense and respond to mechanical, chemical and electrical environmental stimuli with a range of behaviors, including dynamic changes in morphology and mechanical…

Computational Engineering, Finance, and Science · Computer Science 2017-02-28 Endre Somogyi , James A. Glazier

This thesis develops signal-processing algorithms and implementation schemes under constraints of minimal parallelism and memory space, with the goal of improving energy efficiency of low-power computing hardware. We propose (i) a…

Signal Processing · Electrical Eng. & Systems 2025-12-30 Sergey Salishev

In this paper, we study solution operators of physical field equations on geometric meshes from a function-space perspective. We reveal that Hodge orthogonality fundamentally resolves spectral interference by isolating unlearnable…

Machine Learning · Computer Science 2026-05-14 Dongzhe Zheng , Tao Zhong , Christine Allen-Blanchette