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Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently…

Computation and Language · Computer Science 2021-02-17 Gabriele Pergola , Elena Kochkina , Lin Gui , Maria Liakata , Yulan He

Linking biomedical entities is an essential aspect in biomedical natural language processing tasks, such as text mining and question answering. However, a difficulty of linking the biomedical entities using current large language models…

Computation and Language · Computer Science 2023-08-29 Xi Yan , Cedric Möller , Ricardo Usbeck

Entity Linking (EL) is an essential task for semantic text understanding and information extraction. Popular methods separately address the Mention Detection (MD) and Entity Disambiguation (ED) stages of EL, without leveraging their mutual…

Computation and Language · Computer Science 2018-08-30 Nikolaos Kolitsas , Octavian-Eugen Ganea , Thomas Hofmann

Entity Linking is the task of matching a mention to an entity in a given knowledge base (KB). It contributes to annotating a massive amount of documents existing on the Web to harness new facts about their matched entities. However,…

Computation and Language · Computer Science 2022-10-28 Hassan Soliman

Linking named entities occurring in text to their corresponding entity in a Knowledge Base (KB) is challenging, especially when dealing with historical texts. In this work, we introduce Musical Heritage named Entities Recognition,…

Computation and Language · Computer Science 2025-02-21 Arianna Graciotti , Nicolas Lazzari , Valentina Presutti , Rocco Tripodi

We present JEL, a novel computationally efficient end-to-end multi-neural network based entity linking model, which beats current state-of-art model. Knowledge Graphs have emerged as a compelling abstraction for capturing critical…

Machine Learning · Computer Science 2025-09-11 Michael Kishelev , Pranab Bhadani , Wanying Ding , Vinay Chaudhri

Entity linking (EL) is the task of linking a textual mention to its corresponding entry in a knowledge base, and is critical for many knowledge-intensive NLP applications. When applied to tables in scientific papers, EL is a step toward…

Computation and Language · Computer Science 2023-05-02 Yuze Lou , Bailey Kuehl , Erin Bransom , Sergey Feldman , Aakanksha Naik , Doug Downey

Information extraction techniques, including named entity recognition (NER) and relation extraction (RE), are crucial in many domains to support making sense of vast amounts of unstructured text data by identifying and connecting relevant…

Computation and Language · Computer Science 2024-01-17 Mingjie Li , Karin Verspoor

Entity Linking (EL) is the task of automatically identifying entity mentions in a piece of text and resolving them to a corresponding entity in a reference knowledge base like Wikipedia. There is a large number of EL tools available for…

Computation and Language · Computer Science 2021-07-30 Renato Stoffalette João , Pavlos Fafalios , Stefan Dietze

Entity linking (EL), the task of disambiguating mentions in text by linking them to entities in a knowledge graph, is crucial for text understanding, question answering or conversational systems. Entity linking on short text (e.g., single…

Computation and Language · Computer Science 2021-06-21 Hang Jiang , Sairam Gurajada , Qiuhao Lu , Sumit Neelam , Lucian Popa , Prithviraj Sen , Yunyao Li , Alexander Gray

Pre-trained language models induce dense entity representations that offer strong performance on entity-centric NLP tasks, but such representations are not immediately interpretable. This can be a barrier to model uptake in important…

Computation and Language · Computer Science 2021-06-18 Diego Garcia-Olano , Yasumasa Onoe , Ioana Baldini , Joydeep Ghosh , Byron C. Wallace , Kush R. Varshney

Entity linking (mapping ambiguous mentions in text to entities in a knowledge base) is a foundational step in tasks such as knowledge graph construction, question-answering, and information extraction. Our method, LELA, is a modular…

Computation and Language · Computer Science 2026-01-09 Samy Haffoudhi , Fabian M. Suchanek , Nils Holzenberger

We consider a joint information extraction (IE) model, solving named entity recognition, coreference resolution and relation extraction jointly over the whole document. In particular, we study how to inject information from a knowledge base…

Computation and Language · Computer Science 2021-07-07 Severine Verlinden , Klim Zaporojets , Johannes Deleu , Thomas Demeester , Chris Develder

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

Specialized entity linking (EL) models are well-trained at mapping mentions to unique knowledge base (KB) entities according to a given context. However, specialized EL models struggle to disambiguate long-tail entities due to their limited…

Computation and Language · Computer Science 2025-09-29 Amy Xin , Yunjia Qi , Zijun Yao , Fangwei Zhu , Kaisheng Zeng , Xu Bin , Lei Hou , Juanzi Li

Traditional language models are unable to efficiently model entity names observed in text. All but the most popular named entities appear infrequently in text providing insufficient context. Recent efforts have recognized that context can…

Computation and Language · Computer Science 2019-06-25 Angli Liu , Jingfei Du , Veselin Stoyanov

Entity linking (EL) for biomedical text is typically benchmarked on English-only corpora with flat mentions, leaving the more realistic scenario of nested and multilingual mentions largely unexplored. We present our system for the BioNNE…

Computation and Language · Computer Science 2025-09-15 Chunyu Li , Xindi Zheng , Siqi Liu

Progress in biomedical Named Entity Recognition (NER) and Entity Linking (EL) is currently hindered by a fragmented data landscape, a lack of resources for building explainable models, and the limitations of semantically-blind evaluation…

Computation and Language · Computer Science 2025-11-17 Nishant Mishra , Wilker Aziz , Iacer Calixto

This survey presents a comprehensive description of recent neural entity linking (EL) systems developed since 2015 as a result of the "deep learning revolution" in natural language processing. Its goal is to systemize design features of…

Computation and Language · Computer Science 2022-04-08 Ozge Sevgili , Artem Shelmanov , Mikhail Arkhipov , Alexander Panchenko , Chris Biemann

Question Answering systems are generally modelled as a pipeline consisting of a sequence of steps. In such a pipeline, Entity Linking (EL) is often the first step. Several EL models first perform span detection and then entity…

Computation and Language · Computer Science 2020-09-02 Debayan Banerjee , Debanjan Chaudhuri , Mohnish Dubey , Jens Lehmann