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Much of contemporary systems biology owes its success to the abstraction of a network, the idea that diverse kinds of molecular, cellular, and organismal species and interactions can be modeled as relational nodes and edges in a graph of…

Molecular Networks · Quantitative Biology 2017-05-26 Joseph L. Natale , David Hofmann , Damian G. Hernández , Ilya Nemenman

This extended paper presents 1) a novel hierarchy and recursion extension to the process tree model; and 2) the first, recursion aware process model discovery technique that leverages hierarchical information in event logs, typically…

Software Engineering · Computer Science 2017-10-26 Maikel Leemans , Wil M. P. van der Aalst , Mark G. J. van den Brand

In process discovery, the goal is to find, for a given event log, the model describing the underlying process. While process models can be represented in a variety of ways, Petri nets form a theoretically well-explored description language…

Databases · Computer Science 2026-04-08 Lisa Luise Mannel , Wil M. P. van der Aalst

Process mining is a research area focusing on the design of algorithms that can automatically provide insights into business processes. Among the most popular algorithms are those for automated process discovery, which have the ultimate…

Formal Languages and Automata Theory · Computer Science 2023-07-12 Adriano Augusto , Jan Mendling , Maxim Vidgof , Bastian Wurm

Networks are important representations in computer science to communicate structural aspects of a given system of interacting components. The evolution of a network has several topological properties that can provide us information on the…

Social and Information Networks · Computer Science 2020-04-30 Joao Pita Costa , Tihana Galinac Grbac

Multiplex networks describe a large variety of complex systems, whose elements (nodes) can be connected by different types of interactions forming different layers (networks) of the multiplex. Multiplex networks include social networks,…

Physics and Society · Physics 2015-10-29 Jacopo Iacovacci , Zhihao Wu , Ginestra Bianconi

One of the well-known results in concurrency theory concerns the relationship between event structures and occurrence nets: an occurrence net can be associated with a prime event structure, and vice versa. More generally, the relationships…

Logic in Computer Science · Computer Science 2019-10-25 Hernán Melgratti , Claudio Antares Mezzina , Iain Phillips , G. Michele Pinna , Irek Ulidowski

This article investigates emergence and complexity in complex systems that can share information on a network. To this end, we use a theoretical approach from information theory, computability theory, and complex networks. One key studied…

Information Theory · Computer Science 2019-03-20 Felipe S. Abrahão , Klaus Wehmuth , Artur Ziviani

We propose a conceptually novel method of reconstructing the topology of dynamical networks. By examining the correlation between the variable of one node and the derivative of another node, we derive a simple matrix equation yielding the…

Data Analysis, Statistics and Probability · Physics 2015-06-11 Zoran Levnajić

Networks are fundamental building blocks for representing data, and computations. Remarkable progress in learning in structurally defined (shallow or deep) networks has recently been achieved. Here we introduce evolutionary exploratory…

Neural and Evolutionary Computing · Computer Science 2019-11-05 Rise Ooi , Chao-Han Huck Yang , Pin-Yu Chen , Vìctor Eguìluz , Narsis Kiani , Hector Zenil , David Gomez-Cabrero , Jesper Tegnèr

Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

This work focuses on the identifiability of dynamical networks with partial excitation and measurement: a set of nodes are interconnected by unknown transfer functions according to a known topology, some nodes are subject to external…

Optimization and Control · Mathematics 2020-10-12 Antoine Legat , Julien M. Hendrickx

We analyze the input-output behavior of residual networks from a dynamical system point of view by disentangling the residual dynamics from the output activities before the classification stage. For a network with simple skip connections…

Computer Vision and Pattern Recognition · Computer Science 2021-05-12 Fereshteh Lagzi

This paper addresses the understanding and characterization of residual networks (ResNet), which are among the state-of-the-art deep learning architectures for a variety of supervised learning problems. We focus on the mapping component of…

Computer Vision and Pattern Recognition · Computer Science 2018-06-25 Francois Rousseau , Ronan Fablet

Sociotechnological and geospatial processes exhibit time varying structure that make insight discovery challenging. This paper proposes a new statistical model for such systems, modeled as dynamic networks, to address this challenge. It…

Social and Information Networks · Computer Science 2017-06-27 Jace Robinson , Derek Doran

Topology learning of networked dynamical systems is an important problem with implications to optimal control, decision-making over networks, cybersecurity and safety. The majority of prior work in consistent topology estimation relies on…

Optimization and Control · Mathematics 2024-10-15 Harish Doddi , Deepjyoti Deka , Murti Salapaka

The data gathered in all kind of web-based systems, which enable users to interact with each other, provides an opportunity to extract social networks that consist of people and relationships between them. The emerging structures are very…

Social and Information Networks · Computer Science 2014-07-07 Katarzyna Musial , Piotr Bródka , Przemysław Kazienko , Jarosław Gaworecki

We consider structure discovery of undirected graphical models from observational data. Inferring likely structures from few examples is a complex task often requiring the formulation of priors and sophisticated inference procedures.…

Machine Learning · Statistics 2017-08-04 Eugene Belilovsky , Kyle Kastner , Gaël Varoquaux , Matthew Blaschko

The advent of comprehensive synaptic wiring diagrams of large neural circuits has created the field of connectomics and given rise to a number of open research questions. One such question is whether it is possible to reconstruct the…

Neurons and Cognition · Quantitative Biology 2023-02-20 Sebastian Goldt , Florent Krzakala , Lenka Zdeborová , Nicolas Brunel

A type system is introduced for a generic Object Oriented programming language in order to infer resource upper bounds. A sound andcomplete characterization of the set of polynomial time computable functions is obtained. As a consequence,…

Programming Languages · Computer Science 2018-02-20 Emmanuel Hainry , Romain Péchoux
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