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Native extracellular matrices (ECMs), such as those of the human brain and other neural tissues, exhibit networks of molecular interactions between specific matrix proteins and other tissue components. Guided by these naturally…

Biomolecules · Quantitative Biology 2018-10-01 James D. Tang , Charles E. McAnany , Cameron Mura , Kyle J. Lampe

Delicate cloth simulations have long been desired in computer graphics. Various methods were proposed to improve engaged force interactions, collision handling, and numerical integrations. Deep learning has the potential to achieve fast and…

Graphics · Computer Science 2025-01-20 Zhiwei Zhao

This work introduces a lean CNN (convolutional neural network) framework, with a drastically reduced number of fittable parameters (<81K) compared to the benchmarks in current literature, to capture the underlying low-computational cost…

Materials Science · Physics 2025-05-16 Pranoy Ray , Kamal Choudhury , Surya R. Kalidindi

Correlated systems represent a class of materials that are difficult to describe through traditional electronic structure methods. The computational demand to simulate the structural dynamics of such systems, with correlation effects…

Strongly Correlated Electrons · Physics 2024-12-06 Rishi Rao , Li Zhu

Due to reduced manufacturing yields, traditional monolithic chips cannot keep up with the compute, memory, and communication demands of data-intensive applications, such as rapidly growing deep neural network (DNN) models. Chiplet-based…

Hardware Architecture · Computer Science 2025-10-31 Lukas Pfromm , Alish Kanani , Harsh Sharma , Janardhan Rao Doppa , Partha Pratim Pande , Umit Y. Ogras

Electron transfer (ET) at electrochemical interfaces is central to energy conversion and storage, yet its theoretical and computational modeling remain active research areas. This review elucidates key concepts and theories of ET kinetics,…

Chemical Physics · Physics 2026-03-10 Mengke Zhang , Yanxia Chen , Marko M. Melander , Jun Huang

Digital twins (DTs) rely on continuous synchronization between physical systems and their virtual counterparts through online parameter estimation under uncertainty. In many practical settings, however, this task is challenged by low…

Computational Engineering, Finance, and Science · Computer Science 2026-05-19 Yasar Yanik , Himadri Basu , Ricardo G. Sanfelice , Daniele Venturi

Atomistic simulations can provide useful insights into the physical properties of multi-principal-element alloys. However, classical potentials mostly fail to capture key quantum (electronic-structure) effects. We present a deep 3D…

The future evolution of technological systems dedicated to improve energy efficiency will strongly depend on effective and reliable Energy Storage Systems, as key components for Smart Grids, microgrids and electric mobility. Besides…

Systems and Control · Computer Science 2017-02-21 Maurizio Paschero , Gian Luca Storti , Antonello Rizzi , Fabio Massimo Frattale Mascioli , Giorgio Rizzoni

In order to constrain ultra light dark matter models with current and near future weak lensing surveys we need the predictions for the non-linear dark matter power-spectrum. This is commonly extracted from numerical simulations or from…

Cosmology and Nongalactic Astrophysics · Physics 2025-10-15 Dennis Fremstad , Hans A. Winther

A nonequilibrium thermodynamic model is presented for the nonisothermal lithium-ion battery cell. Coupling coefficients, all significant for transport of heat, mass, charge and chemical reaction, were used to model profiles of temperature,…

Chemical Physics · Physics 2024-11-25 Felix Schloms , Øystein Gullbrekken , Signe Kjelstrup

All current experiments searching for an electron EDM d_e are performed with atoms and diatomic molecules. Motivated by significant recent progress in searches for an EDM-type signal in diatomic molecules with an uncompensated electron…

High Energy Physics - Phenomenology · Physics 2014-03-26 Maxim Pospelov , Adam Ritz

Battery degradation is a major challenge in electric vehicles (EV) and energy storage systems (ESS). However, most degradation investigations focus mainly on estimating the state of charge (SOC), which fails to accurately interpret the…

Machine Learning · Computer Science 2025-04-22 Md Azizul Hoque , Babul Salam , Mohd Khair Hassan , Abdulkabir Aliyu , Abedalmuhdi Almomany , Muhammed Sutcu

Conventional battery equivalent circuit models (ECMs) have limited capability to predict performance at high discharge rates, where lithium depleted regions may develop and cause a sudden exponential drop in the cell's terminal voltage.…

Systems and Control · Electrical Eng. & Systems 2024-08-16 Alireza Goshtasbi , Ruxiu Zhao , Ruiting Wang , Sangwoo Han , Wenting Ma , Jeremy Neubauer

Electrochemical energy storage always involves the capacitive process. The prevailing electrode model used in the molecular simulation of polarizable electrode-electrolyte systems is the Siepmann-Sprik model developed for perfect metal…

Materials Science · Physics 2023-10-03 Thomas Dufils , Lisanne Knijff , Yunqi Shao , Chao Zhang

In this project, we present a deep neural network (DNN)-based biophysics model that uses multi-scale and uniform topological and electrostatic features to predict protein properties, such as Coulomb energies or solvation energies. The…

Machine Learning · Computer Science 2026-03-16 Elyssa Sliheet , Md Abu Talha , Weihua Geng

Embedded density functional theory (e-DFT) is used to describe the electronic structure of strongly interacting molecular subsystems. We present a general implementation of the Exact Embedding (EE) method [J. Chem. Phys. 133, 084103 (2010)]…

Other Condensed Matter · Physics 2011-07-27 Jason D. Goodpaster , Taylor A. Barnes , Thomas F. Miller

We develop a combined theoretical and experimental method for estimating the amount of heating that occurs in metallic nanoparticles that are being imaged in an electron microscope. We model the thermal transport between the nanoparticle…

Mesoscale and Nanoscale Physics · Physics 2024-03-25 Cuauhtemoc Nuñez Valencia , William Bang Lomholdt , Matthew Helmi Leth Larsen , Thomas W. Hansen , Jakob Schiøtz

Deep learning models are being deployed in many mobile intelligent applications. End-side services, such as intelligent personal assistants, autonomous cars, and smart home services often employ either simple local models on the mobile or…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-06 Amir Erfan Eshratifar , Mohammad Saeed Abrishami , Massoud Pedram

We present a neural-network emulator for the thermal and chemical evolution in Population III star formation. The emulator accurately reproduces the thermochemical evolution over a wide density range spanning 21 orders of magnitude…

Astrophysics of Galaxies · Physics 2026-05-18 Sojun Ono , Kazuyuki Sugimura