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The Macaulay2 package GraphicalModels contains algorithms for the algebraic study of graphical models associated to undirected, directed and mixed graphs, and associated collections of conditional independence statements. Among the…

We consider the random hypergraph on a finite vertex set by choosing each set of vertices as an hyperedge independently at random. We express the probability distributions of the (lower-)associated simplicial complex and the…

We develop novel hierarchical reciprocal graphical models to infer gene networks from heterogeneous data. In the case of data that can be naturally divided into known groups, we propose to connect graphs by introducing a hierarchical prior…

We present a general and intuitive ambiguity model for intersections, junctions and other structures in binary edge images. The model is combined with edge tracing, where edges are ordered sequences of connected pixels. The objective is to…

We consider large uniform labeled random graphs in different classes with prescribed decorations in their modular decomposition. Our main result is the estimation of the number of copies of every graph as an induced subgraph. As a…

This note contains an elementary discussion of the Arakelov intersection theory of elliptic curves. The main new results are a projection formula for elliptic arithmetic surfaces and a formula for the "energy" of an isogeny between Riemann…

We present a method based on simulated annealing to obtain a nested split graph that approximates a real complex graph. This is used to compute a number of graph indices using very efficient algorithms that we develop, leveraging the…

In this text I present some problems which led to the introduction of special kinds of graphs as tools for studying singular points of algebraic surfaces. I explain how such graphs were first described using words, and how several…

We investigate topological, combinatorial, statistical, and enumeration properties of finite graphs with high Kolmogorov complexity (almost all graphs) using the novel incompressibility method. Example results are: (i) the mean and variance…

Hypergraph is a topological model for networks. In order to study the topology of hypergraphs, the homology of the associated simplicial complexes and the embedded homology have been invented. In this paper, we give some algorithms to…

We introduce a spatial graph and hypergraph model that smoothly interpolates between a graph with purely pairwise edges and a graph where all connections are in large hyperedges. The key component is a spatial clustering resolution…

Graphs are used in many disciplines to model the relationships that exist between objects in a complex discrete system. Researchers may wish to compare a network of interest to a "typical" graph from a family (or ensemble) of graphs which…

Decomposable dependency models and their graphical counterparts, i.e., chordal graphs, possess a number of interesting and useful properties. On the basis of two characterizations of decomposable models in terms of independence…

We determine the maximum number of maximal independent sets of arbitrary graphs in terms of their covering numbers and we completely characterize the extremal graphs. As an application, we give a similar result for K\"onig-Egerv\'ary graphs…

Graphs are ubiquitous in modelling relational structures. Recent endeavours in machine learning for graph-structured data have led to many architectures and learning algorithms. However, the graph used by these algorithms is often…

In this paper we consider the concept of preintersection numbers of a graph. These numbers are determined by the spectrum of the adjacency matrix of the graph, and generalize the intersection numbers of a distance-regular graph. By using…

Fix an ordinary abelian variety defined over a finite field. The ideal class group of its endomorphism ring acts freely on the set of isogenous varieties with same endomorphism ring, by complex multiplication. Any subgroup of the class…

We develop a theory of confluence of graphs. We describe an algorithm for proving that a given system of reduction rules for abstract graphs and graphs in surfaces is locally confluent. We apply this algorithm to show that each simple Lie…

This article explores the connection between radical isogenies and modular curves. Radical isogenies are formulas designed for the computation of chains of isogenies of fixed small degree $N$, introduced by Castryck, Decru, and Vercauteren…

Initial steps in the study of inner expansion properties of infinite Cayley graphs and other infinite graphs, such as hyperbolic ones, are taken, in a flavor similar to the well-known Lipton-Tarjan square root separation result for planar…