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The evolutionary trajectory of a protein through sequence space is constrained by function and three-dimensional (3D) structure. Residues in spatial proximity tend to co-evolve, yet attempts to invert the evolutionary record to identify…

Biomolecules · Quantitative Biology 2015-03-13 Debora S. Marks , Lucy J. Colwell , Robert Sheridan , Thomas A. Hopf , Andrea Pagnani , Riccardo Zecchina , Chris Sander

The two main theorems proved here are as follows: If $A$ is a finite dimensional algebra over an algebraically closed field, the identity component of the algebraic group of outer automorphisms of $A$ is invariant under derived equivalence.…

Representation Theory · Mathematics 2007-05-23 Birge Huisgen-Zimmermann , Manuel Saorin

A configuration of points and lines is cyclic if it has an automorphism which permutes its points in a full cycle. A closed formula is derived for the number of non-isomorphic connected cyclic configurations of type (v_3), i.e., which have…

Combinatorics · Mathematics 2013-01-14 Sergio Hiroki Koike-Quintanar , István Kovács , Tomaž Pisanski

We define a trisection of a closed, orientable three dimensional manifold into three handlebodies, and a notion of stabilization for these trisections. Several examples of trisections are described in detail. We define the trisection genus…

Geometric Topology · Mathematics 2018-06-13 Dale Koenig

We study real lines on certain Moishezon threefolds which are potentially twistor spaces of 3CP^2. Here, line means a smooth rational curve whose normal bundle is O(1)^2 and the reality implies the invariance under an anti-holomorphic…

Differential Geometry · Mathematics 2016-09-07 Nobuhiro Honda

The surrounding of a vertex in a network can be more or less symmetric. We derive measures of a specific kind of symmetry of a vertex which we call degree symmetry -- the property that many paths going out from a vertex have overlapping…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Petter Holme

Recently Baranyai described a necessary combinatorial characterisation of graph rigidity for dimension 3. In this short note we provide a counter-example to the converse of the condition. Additionally, we provide an alternative proof to the…

Combinatorics · Mathematics 2026-01-28 Sean Dewar

For sufficiently tame paths in $\mathbb{R}^n$, Euclidean length provides a canonical parametrization of a path by length. In this paper we provide such a parametrization for all continuous paths. This parametrization is based on an…

General Topology · Mathematics 2016-09-13 L. C. Hoehn , L. G. Oversteegen , E. D. Tymchatyn

We show a duality which arises from distributions of Cartan type, having growth (2, 3, 5), from the view point of geometric control theory. In fact we consider the space of singular (or abnormal) paths on a given five dimensional space…

Differential Geometry · Mathematics 2013-08-13 Goo Ishikawa , Yumiko Kitagawa , Wataru Yukuno

We say that a $2$-dimensional CW complex is a multibranched surface if we remove all points whose open neighborhoods are homeomorphic to the $2$-dimensional Euclidean space, then we obtain a $1$-dimensional complex which is homeomorphic to…

Geometric Topology · Mathematics 2016-03-31 Shosaku Matsuzaki , Makoto Ozawa

The graph theoretic properties of the clustering coefficient, characteristic (or average) path length, global and local efficiency, provide valuable information regarding the structure of a graph. These four properties have applications to…

Combinatorics · Mathematics 2017-09-25 Alexander Strang , Oliver Haynes , Nathan D. Cahill , Darren A. Narayan

There are four characteristic circles for each triangle on a plane. All for are tangential to the three straight lines containing the triangles' three sides. Three are exterior circles, the fourth is the in-circle. When the triangle is…

General Mathematics · Mathematics 2008-03-26 Konstantine "Hermes" Zelator

Many real life networks present an average path length logarithmic with the number of nodes and a degree distribution which follows a power law. Often these networks have also a modular and self-similar structure and, in some cases -…

Physics and Society · Physics 2010-02-17 Alicia Miralles , Francesc Comellas , Lichao Chen , Zhongzhi Zhang

Few explicit families of 3-folds are known for which the computation of the canonical ring is accessible and the birational geometry non-trivial. In this note we investigate a family of determinantal 3-folds in $\mathbb P^2 \times \mathbb…

Algebraic Geometry · Mathematics 2022-12-26 Vladimir Lazić , Frank-Olaf Schreyer

Quasi-isometry is a measure of how similar two graphs are at `large-scale'. Nguyen, Scott, and Seymour [arXiv:2501.09839] and Hickingbotham [arXiv:2501.10840] independently gave a characterisation of graphs quasi-isometric to graphs of…

Combinatorics · Mathematics 2025-12-29 Marc Distel

Our concern is the digitalization of line segments in two dimensions as considered by Chun et al.[Discrete Comput. Geom., 2009] and Christ et al.[Discrete Comput. Geom., 2012]. The key property that differentiates the research of Chun et…

Computational Geometry · Computer Science 2015-05-04 Iffat Chowdhury , Matt Gibson

We present a characterisation of blenders based on mapping properties of certain sets of curves that can be rigorously verified by computer-assisted methods. We develop an algorithm to construct these sets of curves that requires only a…

Dynamical Systems · Mathematics 2026-03-30 Andy Hammerlindl , Natalia McAlister , Warwick Tucker

We describe the structure of connected graphs with the minimum and maximum average distance, radius, diameter, betweenness centrality, efficiency and resistance distance, given their order and size. We find tight bounds on these graph…

Molecular Networks · Quantitative Biology 2011-05-02 Dionysios Barmpoutis , Richard M. Murray

A graph is called a chain graph if it is bipartite and the neighborhoods of the vertices in each color class form a chain with respect to inclusion. A threshold graph can be obtained from a chain graph by making adjacent all pairs of…

Combinatorics · Mathematics 2018-03-02 M. Anđelić , E. Ghorbani , S. K. Simić

We interpret a normal surface in a (singular) three-manifold in terms of the homology of a chain complex. This allows us to study the relation between normal surfaces and their quadrilateral co-ordinates. Specifically, we give a proof of an…

Geometric Topology · Mathematics 2008-10-03 Siddhartha Gadgil , Tejas Kalelkar
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