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The throughput of electron microscopes has increased significantly in recent years, enabling detailed analysis of cell morphology and ultrastructure. Analysis of neural circuits at single-synapse resolution remains the flagship target of…

Computer Vision and Pattern Recognition · Computer Science 2019-08-07 Constantin Pape , Alex Matskevych , Adrian Wolny , Julian Hennies , Giula Mizzon , Marion Louveaux , Jacob Musser , Alexis Maizel , Detlev Arendt , Anna Kreshuk

To address the annotation scarcity issue in some cases of semantic segmentation, there have been a few attempts to develop the segmentation model in the few-shot learning paradigm. However, most existing methods only focus on the…

Computer Vision and Pattern Recognition · Computer Science 2019-11-26 Pinzhuo Tian , Zhangkai Wu , Lei Qi , Lei Wang , Yinghuan Shi , Yang Gao

It has been shown that traditional deep learning methods for electronic microscopy segmentation usually suffer from low transferability when samples and annotations are limited, while large-scale vision foundation models are more robust…

Image and Video Processing · Electrical Eng. & Systems 2024-03-14 Yiran Wang , Li Xiao

Semantic segmentation is a complex task that relies heavily on large amounts of annotated image data. However, annotating such data can be time-consuming and resource-intensive, especially in the medical domain. Active Learning (AL) is a…

Computer Vision and Pattern Recognition · Computer Science 2023-12-12 Fei Wu , Pablo Marquez-Neila , Mingyi Zheng , Hedyeh Rafii-Tari , Raphael Sznitman

Despite the recent success of deep learning methods at achieving new state-of-the-art accuracy for medical image segmentation, some major limitations are still restricting their deployment into clinics. One major limitation of deep…

Image and Video Processing · Electrical Eng. & Systems 2023-05-30 Lucas Fidon

The insertion of deep learning in medical image analysis had lead to the development of state-of-the art strategies in several applications such a disease classification, as well as abnormality detection and segmentation. However, even the…

Image and Video Processing · Electrical Eng. & Systems 2022-02-24 Mauricio Orbes-Arteaga , Thomas Varsavsky , Lauge Sorensen , Mads Nielsen , Akshay Pai , Sebastien Ourselin , Marc Modat , M Jorge Cardoso

Accurate segmentation of punctate white matter lesions (PWML) in preterm neonates by an automatic algorithm can better assist doctors in diagnosis. However, the existing algorithms have many limitations, such as low detection accuracy and…

Image and Video Processing · Electrical Eng. & Systems 2019-10-23 Yalong Liu , Jie Li , Miaomiao Wang , Zhicheng Jiao , Jian Yang , Xianjun Li

Polyp segmentation is a crucial step towards computer-aided diagnosis of colorectal cancer. However, most of the polyp segmentation methods require pixel-wise annotated datasets. Annotated datasets are tedious and time-consuming to produce,…

Computer Vision and Pattern Recognition · Computer Science 2022-11-23 Guangyu Ren , Michalis Lazarou , Jing Yuan , Tania Stathaki

Annotation of medical images has been a major bottleneck for the development of accurate and robust machine learning models. Annotation is costly and time-consuming and typically requires expert knowledge, especially in the medical domain.…

Computer Vision and Pattern Recognition · Computer Science 2020-01-08 Holger Roth , Ling Zhang , Dong Yang , Fausto Milletari , Ziyue Xu , Xiaosong Wang , Daguang Xu

Machine learning has been widely adopted for medical image analysis in recent years given its promising performance in image segmentation and classification tasks. As a data-driven science, the success of machine learning, in particular…

Computer Vision and Pattern Recognition · Computer Science 2020-07-06 Chengliang Dai , Shuo Wang , Yuanhan Mo , Kaichen Zhou , Elsa Angelini , Yike Guo , Wenjia Bai

The use of deep learning methods for precision farming is gaining increasing interest. However, collecting training data in this application field is particularly challenging and costly due to the need of acquiring information during the…

Computer Vision and Pattern Recognition · Computer Science 2024-07-22 Mulham Fawakherji , Vincenzo Suriani , Daniele Nardi , Domenico Daniele Bloisi

Semantic segmentation is a crucial task in medical imaging. Although supervised learning techniques have proven to be effective in performing this task, they heavily depend on large amounts of annotated training data. The recently…

Computer Vision and Pattern Recognition · Computer Science 2024-11-20 Ron Keuth , Lasse Hansen , Maren Balks , Ronja Jäger , Anne-Nele Schröder , Ludger Tüshaus , Mattias Heinrich

The lack of sufficient annotated image data is a common issue in medical image segmentation. For some organs and densities, the annotation may be scarce, leading to poor model training convergence, while other organs have plenty of…

Image and Video Processing · Electrical Eng. & Systems 2021-09-22 Anastasia Makarevich , Azade Farshad , Vasileios Belagiannis , Nassir Navab

Segmentation maps of medical images annotated by medical experts contain rich spatial information. In this paper, we propose to decompose annotation maps to learn disentangled and richer feature transforms for segmentation problems in…

Image and Video Processing · Electrical Eng. & Systems 2019-06-10 Yizhe Zhang , Michael T. C. Ying , Danny Z. Chen

Due to the limitation of available labeled data, medical image segmentation is a challenging task for deep learning. Traditional data augmentation techniques have been shown to improve segmentation network performances by optimizing the…

Image and Video Processing · Electrical Eng. & Systems 2022-11-03 Kevin Ginsburger

Background: Deep learning has presented great potential in accurate MR image segmentation when enough labeled data are provided for network optimization. However, manually annotating 3D MR images is tedious and time-consuming, requiring…

Image and Video Processing · Electrical Eng. & Systems 2023-12-19 Yousuf Babiker M. Osman , Cheng Li , Weijian Huang , Shanshan Wang

Deep learning-based techniques have proven effective in polyp segmentation tasks when provided with sufficient pixel-wise labeled data. However, the high cost of manual annotation has created a bottleneck for model generalization. To…

Computer Vision and Pattern Recognition · Computer Science 2024-03-22 Duojun Huang , Xinyu Xiong , De-Jun Fan , Feng Gao , Xiao-Jian Wu , Guanbin Li

Labeling errors in remote sensing (RS) image segmentation datasets often remain implicit and subtle due to ambiguous class boundaries, mixed pixels, shadows, complex terrain features, and subjective annotator bias. Furthermore, the scarcity…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Yechan Kim , DongHo Yoon , SooYeon Kim , Moongu Jeon

Deep learning has revolutionized various fields, yet its efficacy is hindered by overfitting and the requirement of extensive annotated data, particularly in few-shot learning scenarios where limited samples are available. This paper…

Computer Vision and Pattern Recognition · Computer Science 2024-12-05 Jiacheng Hu , Zhen Qi , Jianjun Wei , Jiajing Chen , Runyuan Bao , Xinyu Qiu

Instance segmentation in 3D images is a fundamental task in biomedical image analysis. While deep learning models often work well for 2D instance segmentation, 3D instance segmentation still faces critical challenges, such as insufficient…

Computer Vision and Pattern Recognition · Computer Science 2018-07-02 Zhuo Zhao , Lin Yang , Hao Zheng , Ian H. Guldner , Siyuan Zhang , Danny Z. Chen