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Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…

Populations and Evolution · Quantitative Biology 2014-06-03 Mareike Fischer , Michelle Galla , Lina Herbst , Mike Steel

This paper introduces a causation coefficient which is defined in terms of probabilistic causal models. This coefficient is suggested as the natural causal analogue of the Pearson correlation coefficient and permits comparing causation and…

Methodology · Statistics 2017-08-18 Joshua Brulé

SpectralNet is a graph clustering method that uses neural network to find an embedding that separates the data. So far it was only used with $k$-nn graphs, which are usually constructed using a distance metric (e.g., Euclidean distance).…

Machine Learning · Computer Science 2023-02-28 Mashaan Alshammari , John Stavrakakis , Adel F. Ahmed , Masahiro Takatsuka

Let $G = (V,E)$ denote a simple graph with the vertex set $V$ and the edge set $E$. The profile of a vertex set $V'\subseteq V$ denotes the multiset of pairwise distances between the vertices of $V'$. Two disjoint subsets of $V$ are…

Combinatorics · Mathematics 2013-11-08 Radoslav Fulek , Slobodan Mitrović

This paper describes a new approach to the problem of the structural research of clusters based on the theory of geodetic and k-geodetic graphs. We firmly believe that this same approach can be used when solving problems of correlation…

Discrete Mathematics · Computer Science 2017-07-17 Carlos E. Frasser , George N. Vostrov

This chapter discusses the importance of incorporating three-dimensional symmetries in the context of statistical learning models geared towards the interpolation of the tensorial properties of atomic-scale structures. We focus on Gaussian…

Chemical Physics · Physics 2019-04-04 Andrea Grisafi , David M. Wilkins , Michael J. Willatt , Michele Ceriotti

Large tree structures are ubiquitous and real-world relational datasets often have information associated with nodes (e.g., labels or other attributes) and edges (e.g., weights or distances) that need to be communicated to the viewers. Yet,…

Computational Geometry · Computer Science 2023-05-18 Kathryn Gray , Mingwei Li , Reyan Ahmed , Md. Khaledur Rahman , Ariful Azad , Stephen Kobourov , Katy Börner

The metric dimension of a graph $G$ is the minimal size of a subset $R$ of vertices of $G$ that, upon reporting their graph distance from a distingished (source) vertex $v^\star$, enable unique identification of the source vertex $v^\star$…

Probability · Mathematics 2021-11-16 Júlia Komjáthy , Gergely Ódor

Topological structures such as the merge tree provide an abstract and succinct representation of scalar fields. They facilitate effective visualization and interactive exploration of feature-rich data. A merge tree captures the topology of…

Computational Geometry · Computer Science 2024-06-06 Raghavendra Sridharamurthy , Talha Bin Masood , Adhitya Kamakshidasan , Vijay Natarajan

For a pair consisting of a gene tree and a species tree, the ancestral configurations at an internal node of the species tree are the distinct sets of gene lineages that can be present at that node. Ancestral configurations appear in…

Combinatorics · Mathematics 2020-06-17 Filippo Disanto , Michael Fuchs , Ariel R. Paningbatan , Noah A. Rosenberg

We present a simple iterative strategy for measuring the connection strength between a pair of vertices in a graph. The method is attractive in that it has a linear complexity and can be easily parallelized. Based on an analysis of the…

Discrete Mathematics · Computer Science 2009-09-24 Jie Chen , Ilya Safro

Pearson's $\rho$ is the most used measure of statistical dependence. It gives a complete characterization of dependence in the Gaussian case, and it also works well in some non-Gaussian situations. It is well known, however, that it has a…

Statistics Theory · Mathematics 2018-09-28 Dag Tjøstheim , Håkon Otneim , Bård Støve

Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…

Data Structures and Algorithms · Computer Science 2020-06-29 Sean Cleary , Haris Nadeem

In this paper we are interested in the joint distribution of two order statistics from overlapping samples. We give an explicit formula for the distribution of such a pair of random variables under the assumption that the parent…

Probability · Mathematics 2019-03-20 Fernando López-Blázquez , Nan-Cheng Su , Jacek Wesołowski

We construct and analyze an estimator of association between random variables based on their similarity in both direction and magnitude. Under special conditions, the proposed measure becomes a robust and consistent estimator of the linear…

Econometrics · Economics 2026-01-21 Ilya Archakov

We determine a positive real number (weight) which corresponds to the intersection point (vertex) of two non-overlapping geodesic arcs, which depends on the two weights which correspond to two points of these geodesicarcs, respectively, and…

General Mathematics · Mathematics 2020-04-30 Anastasios Zachos

We construct measures invariant with respect to equivalence relations which are graphed by horospheric products of trees. The construction is based on using conformal systems of boundary measures on treed equivalence relations. The…

Probability · Mathematics 2009-06-30 Vadim A. Kaimanovich , Florian Sobieczky

We consider 15 properties of labeled random graphs that are of interest in the graph-theoretical and the graph mining literature, such as clustering coefficients, centrality measures, spectral radius, degree assortativity, treedepth,…

Social and Information Networks · Computer Science 2022-06-24 Hang Chen , Vahan Huroyan , Stephen Kobourov , Myroslav Kryven

We seek a practical method for establishing dense correspondences between two images with similar content, but possibly different 3D scenes. One of the challenges in designing such a system is the local scale differences of objects…

Computer Vision and Pattern Recognition · Computer Science 2016-04-20 Moria Tau , Tal Hassner

Real-life graphs usually have various kinds of events happening on them, e.g., product purchases in online social networks and intrusion alerts in computer networks. The occurrences of events on the same graph could be correlated,…

Databases · Computer Science 2012-08-02 Ziyu Guan , Xifeng Yan , Lance M. Kaplan
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