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Generation of automated clinical notes have been posited as a strategy to mitigate physician burnout. In particular, an automated narrative summary of a patient's hospital stay could supplement the hospital course section of the discharge…

Computation and Language · Computer Science 2023-05-12 Vince C. Hartman , Sanika S. Bapat , Mark G. Weiner , Babak B. Navi , Evan T. Sholle , Thomas R. Campion,

Automated summarization of clinical texts can reduce the burden of medical professionals. "Discharge summaries" are one promising application of the summarization, because they can be generated from daily inpatient records. Our preliminary…

Computation and Language · Computer Science 2022-12-21 Kenichiro Ando , Takashi Okumura , Mamoru Komachi , Hiromasa Horiguchi , Yuji Matsumoto

Brief Hospital Course (BHC) summaries are succinct summaries of an entire hospital encounter, embedded within discharge summaries, written by senior clinicians responsible for the overall care of a patient. Methods to automatically produce…

Computation and Language · Computer Science 2023-04-11 Thomas Searle , Zina Ibrahim , James Teo , Richard Dobson

Hospital discharge documentation is among the most essential, yet time-consuming documents written by medical practitioners. The objective of this study was to automatically generate hospital discharge summaries using neural network…

Computation and Language · Computer Science 2023-05-25 Koyena Pal , Seyed Ali Bahrainian , Laura Mercurio , Carsten Eickhoff

Patient summarization is essential for clinicians to provide coordinated care and practice effective communication. Automated summarization has the potential to save time, standardize notes, aid clinical decision making, and reduce medical…

Information Retrieval · Computer Science 2018-10-30 Emily Alsentzer , Anne Kim

Electronic Health Records (EHRs) provide vital contextual information to radiologists and other physicians when making a diagnosis. Unfortunately, because a given patient's record may contain hundreds of notes and reports, identifying…

Electronic health records (EHR) are widely believed to hold a profusion of actionable insights, encrypted in an irregular, semi-structured format, amidst a loud noise background. To simplify learning patterns of health and disease, medical…

Computation and Language · Computer Science 2022-12-13 David A. Bloore , Romane Gauriau , Anna L. Decker , Jacob Oppenheim

Extractive summarization is very useful for physicians to better manage and digest Electronic Health Records (EHRs). However, the training of a supervised model requires disease-specific medical background and is thus very expensive. We…

Computation and Language · Computer Science 2018-11-28 Xiangan Liu , Keyang Xu , Pengtao Xie , Eric Xing

This study presents three deidentified large medical text datasets, named DISCHARGE, ECHO and RADIOLOGY, which contain 50K, 16K and 378K pairs of report and summary that are derived from MIMIC-III, respectively. We implement convincing…

Computation and Language · Computer Science 2023-02-09 Yunqi Zhu , Xuebing Yang , Yuanyuan Wu , Wensheng Zhang

Electronic health records (EHRs) contain extensive unstructured clinical data that can overwhelm emergency physicians trying to identify critical information. We present a two-stage summarization system that runs entirely on embedded…

Computation and Language · Computer Science 2025-10-09 Jiajun Wu , Swaleh Zaidi , Braden Teitge , Henry Leung , Jiayu Zhou , Jessalyn Holodinsky , Steve Drew

Long-form clinical summarization of hospital admissions has real-world significance because of its potential to help both clinicians and patients. The faithfulness of summaries is critical to their safe usage in clinical settings. To better…

Computation and Language · Computer Science 2023-03-08 Griffin Adams , Jason Zucker , Noémie Elhadad

Electronic Health Records (EHRs) are pivotal in clinical practices, yet their retrieval remains a challenge mainly due to semantic gap issues. Recent advancements in dense retrieval offer promising solutions but existing models, both…

Information Retrieval · Computer Science 2025-07-25 Zhengyun Zhao , Huaiyuan Ying , Yue Zhong , Sheng Yu

Distributed representations of medical concepts have been used to support downstream clinical tasks recently. Electronic Health Records (EHR) capture different aspects of patients' hospital encounters and serve as a rich source for…

Computation and Language · Computer Science 2020-01-07 Shaika Chowdhury , Chenwei Zhang , Philip S. Yu , Yuan Luo

This paper proposes a medical literature summary generation method based on the BERT model to address the challenges brought by the current explosion of medical information. By fine-tuning and optimizing the BERT model, we develop an…

Computation and Language · Computer Science 2024-10-29 Jiacheng Hu , Yiru Cang , Guiran Liu , Meiqi Wang , Weijie He , Runyuan Bao

Writing discharge summaries to transfer medical information is an important but time-consuming process that can be assisted by Large Language Models (LLMs). This prospective mixed methods pilot study evaluated an Electronic Health Record…

Discharge summaries in Electronic Health Records (EHRs) are crucial for clinical decision-making, but their length and complexity make information extraction challenging, especially when dealing with accumulated summaries across multiple…

Computation and Language · Computer Science 2024-11-12 Sunjun Kweon , Jiyoun Kim , Heeyoung Kwak , Dongchul Cha , Hangyul Yoon , Kwanghyun Kim , Jeewon Yang , Seunghyun Won , Edward Choi

In recent years, the trend of deploying digital systems in numerous industries has hiked. The health sector has observed an extensive adoption of digital systems and services that generate significant medical records. Electronic health…

Computation and Language · Computer Science 2022-03-01 Neel Kanwal , Giuseppe Rizzo

This paper proposes a medical text summarization method based on LongFormer, aimed at addressing the challenges faced by existing models when processing long medical texts. Traditional summarization methods are often limited by short-term…

Computation and Language · Computer Science 2025-03-11 Dan Sun , Jacky He , Hanlu Zhang , Zhen Qi , Hongye Zheng , Xiaokai Wang

To improve the reliability of Large Language Models (LLMs) in clinical applications, retrieval-augmented generation (RAG) is extensively applied to provide factual medical knowledge. However, beyond general medical knowledge from open-ended…

Computation and Language · Computer Science 2025-05-29 Justice Ou , Tinglin Huang , Yilun Zhao , Ziyang Yu , Peiqing Lu , Rex Ying

Discharge Summaries are documents written by medical professionals that detail a patient's visit to a care facility. They contain a wealth of information crucial for patient care, and automating their generation could significantly reduce…

Computation and Language · Computer Science 2025-12-09 Tiago Rodrigues , Carla Teixeira Lopes
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