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A rooted arborescence of a directed graph is a spanning tree directed towards a particular vertex. A recent work of Chepuri et al. showed that the arborescences of a covering graph of a directed graph G are closely related to the…
We study "positive" graphs that have a nonnegative homomorphism number into every edge-weighted graph (where the edgeweights may be negative). We conjecture that all positive graphs can be obtained by taking two copies of an arbitrary…
There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…
An increasing 1,2-tree is a labeled graph formed by starting with a vertex and then repeatedly attaching a leaf to a vertex or a triangle to an edge, the labeling of the vertices corresponding to the order in which the vertices are added.…
Shrub-depth and rank-depth are dense analogues of the tree-depth of a graph. It is well known that a graph has large tree-depth if and only if it has a long path as a subgraph. We prove an analogous statement for shrub-depth and rank-depth,…
We consider non-trivial homomorphisms to reflexive oriented graphs in which some pair of adjacent vertices have the same image. Using a notion of convexity for oriented graphs, we study those oriented graphs that do not admit such…
Homomorphically full graphs are those for which every homomorphic image is isomorphic to a subgraph. We extend the definition of homomorphically full to oriented graphs in two different ways. For the first of these, we show that…
Spanning trees of complete bipartite graphs exhibit a rich interaction between degree sequences and graph structure. In this paper, we obtain lower bounds on the number of isomorphism classes of spanning trees in $K_{a,b}, 2 \leq a \leq b$…
P\'olya trees are rooted, unlabeled trees on $n$ vertices. This paper gives an efficient, new way to generate P\'olya trees. This allows comparing typical unlabeled and labeled tree statistics and comparing asymptotic theorems with…
A rooted acyclic digraph N with labelled leaves displays a tree T when there exists a way to select a unique parent of each hybrid vertex resulting in the tree T. Let Tr(N) denote the set of all trees displayed by the network N. In general,…
We consider the problem of testing if two input forests are isomorphic or are far from being so. An algorithm is called an $\varepsilon$-tester for forest-isomorphism if given an oracle access to two forests $G$ and $H$ in the adjacency…
In this series, we introduce and investigate the concept of connectoids, which captures the connectivity structure of various discrete objects such as undirected graphs, directed graphs, bidirected graphs, hypergraphs and finitary matroids.…
We show, under natural conditions, that uniform rooted trees with fixed degree sequence converge after renormalization toward inhomogeneous continuum random trees (ICRT). We also provide a sharp upper-bound for the tail of their heights. We…
In this paper we consider bi-Cohen-Macaulay graphs, and give a complete classification of such graphs in the case they are bipartite or chordal. General bi-Cohen-Macaulay graphs are classified up to separation. The inseparable…
There is a well-known correspondence between infinite trees and ultrametric spaces which can be interpreted as an equivalence of categories and comes from considering the end space of the tree. In this equivalence, uniformly continuous maps…
In this paper, we introduce the concept of the independence graph of a directed 2-complex. We show that the class of diagram groups is closed under graph products over independence graphs of rooted 2-trees. This allows us to show that a…
Unigraphs are graphs identifiable up to isomorphism from their degree sequences. Given a class $\mathcal{A}$ of graphs, we define the class of $\mathcal{A}$-unigraphs to be graphs identifiable from degree sequence and membership in…
Working with tree graphs is always easier than with loopy ones and spanning trees are the closest tree-like structures to a given graph. We find a correspondence between the solutions of random K-satisfiability problem and those of spanning…
Many discrete mathematics problems in phylogenetics are defined in terms of the relative labeling of pairs of leaf-labeled trees. These relative labelings are naturally formalized as tanglegrams, which have previously been an object of…
An ordered labeled tree is a tree in which the nodes are labeled and the left-to-right order among siblings is relevant. The edit distance between two ordered labeled trees is the minimum cost of changing one tree into the other through a…