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Machine learning has the potential to revolutionize the field of molecular simulation through the development of efficient and accurate models of interatomic interactions. In particular, neural network models can describe interactions at…

Chemical Physics · Physics 2022-04-06 Ang Gao , Richard C. Remsing

Fast Ewald summation efficiently evaluates Coulomb interactions and is widely used in molecular dynamics simulations. It is based on a split into a short-range and a long-range part, where evaluation of the latter is accelerated using the…

Numerical Analysis · Mathematics 2026-04-20 Erik Boström , Anna-Karin Tornberg , Ludvig af Klinteberg

Understanding the fundamental principles behind the massive success of neural networks is one of the most important open questions in deep learning. However, due to the highly complex nature of the problem, progress has been relatively…

Machine Learning · Computer Science 2021-12-13 Lechao Xiao

In a previous paper a method was developed to subtract the interactions due to periodically replicated charges (or other long-range entities) in one spatial dimension. The method constitutes a generalized "electrostatic layer correction"…

Materials Science · Physics 2009-11-07 Jason de Joannis , Axel Arnold , Christian Holm

A new method for Ewald summation in planar/slablike geometry, i.e. systems where periodicity applies in two dimensions and the last dimension is "free" (2P), is presented. We employ a spectral representation in terms of both Fourier series…

Computational Physics · Physics 2015-05-30 Dag Lindbo , Anna-Karin Tornberg

Message passing neural networks have demonstrated significant efficacy in predicting molecular interactions. Introducing equivariant vectorial representations augments expressivity by capturing geometric data symmetries, thereby improving…

Machine Learning · Computer Science 2025-08-01 Zetian Mao , Chuan-Shen Hu , Jiawen Li , Chen Liang , Diptesh Das , Masato Sumita , Kelin Xia , Koji Tsuda

Many problems in computer vision and machine learning can be cast as learning on hypergraphs that represent higher-order relations. Recent approaches for hypergraph learning extend graph neural networks based on message passing, which is…

Machine Learning · Computer Science 2022-08-23 Jinwoo Kim , Saeyoon Oh , Sungjun Cho , Seunghoon Hong

Orthogonal Frequency Division Multiplexing (OFDM) is the dominant waveform in modern wireless systems, but suffers performance degradation in high-mobility environments due to Doppler-induced inter-carrier interference and unreliable…

Information Theory · Computer Science 2026-04-17 S. Ashwin Hebbar , Sravan Kumar Ankireddy , Harshithanjani Athi , Brandon Nguyen , Pramod Viswanath , Hyeji Kim

Graph Neural Networks (GNNs) have recently emerged as a promising approach to tackling power allocation problems in wireless networks. Since unpaired transmitters and receivers are often spatially distant, the distance-based threshold is…

Information Theory · Computer Science 2024-06-04 Lili Chen , Jingge Zhu , Jamie Evans

Message passing-based graph neural networks (GNNs) have achieved great success in many real-world applications. For a sampled mini-batch of target nodes, the message passing process is divided into two parts: message passing between nodes…

Machine Learning · Computer Science 2025-02-28 Zhihao Shi , Jie Wang , Zhiwei Zhuang , Xize Liang , Bin Li , Feng Wu

Graph neural networks (GNNs) are emerging machine learning models on graphs. Permutation-equivariance and proximity-awareness are two important properties highly desirable for GNNs. Both properties are needed to tackle some challenging…

Machine Learning · Computer Science 2022-02-23 Ziwei Zhang , Chenhao Niu , Peng Cui , Jian Pei , Bo Zhang , Wenwu Zhu

Graph neural networks (GNNs) have been widely used to learn vector representation of graph-structured data and achieved better task performance than conventional methods. The foundation of GNNs is the message passing procedure, which…

Machine Learning · Computer Science 2022-01-31 Takeshi D. Itoh , Takatomi Kubo , Kazushi Ikeda

Graph Neural Networks (GNNs) have shown great potential in the field of graph representation learning. Standard GNNs define a local message-passing mechanism which propagates information over the whole graph domain by stacking multiple…

Computer Vision and Pattern Recognition · Computer Science 2023-06-01 Xiaoxin He , Bryan Hooi , Thomas Laurent , Adam Perold , Yann LeCun , Xavier Bresson

Machine learning interatomic potentials (MLIPs) provide a computationally efficient alternative to quantum mechanical simulations for predicting material properties. Message-passing graph neural networks, commonly used in these MLIPs, rely…

Chemical Physics · Physics 2025-09-08 Moin Uddin Maruf , Sungmin Kim , Zeeshan Ahmad

We present a hierarchical neural message passing architecture for learning on molecular graphs. Our model takes in two complementary graph representations: the raw molecular graph representation and its associated junction tree, where nodes…

Machine Learning · Computer Science 2020-06-23 Matthias Fey , Jan-Gin Yuen , Frank Weichert

Solving partial differential equations (PDEs) serves as a cornerstone for modeling complex dynamical systems. Recent progresses have demonstrated grand benefits of data-driven neural-based models for predicting spatiotemporal dynamics…

Machine Learning · Computer Science 2025-03-04 Bocheng Zeng , Qi Wang , Mengtao Yan , Yang Liu , Ruizhi Chengze , Yi Zhang , Hongsheng Liu , Zidong Wang , Hao Sun

Graph Neural Networks (GNNs) typically operate by message-passing, where the state of a node is updated based on the information received from its neighbours. Most message-passing models act as graph convolutions, where features are mixed…

Hypergraphs effectively model higher-order relationships in natural phenomena, capturing complex interactions beyond pairwise connections. We introduce a novel hypergraph message passing framework inspired by interacting particle systems,…

Machine Learning · Computer Science 2025-05-27 Yixuan Ma , Kai Yi , Pietro Lio , Shi Jin , Yu Guang Wang

A crucial aspect in the simulation of electrochemical interfaces consists in treating the distribution of electronic charge of electrode materials that are put in contact with an electrolyte solution. Recently, it has been shown how a…

Materials Science · Physics 2024-07-16 Andrea Grisafi , Mathieu Salanne

We present a novel edge-level ego-network encoding for learning on graphs that can boost Message Passing Graph Neural Networks (MP-GNNs) by providing additional node and edge features or extending message-passing formats. The proposed…

Machine Learning · Computer Science 2024-05-03 Nurudin Alvarez-Gonzalez , Andreas Kaltenbrunner , Vicenç Gómez
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