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The Kauffman model is the archetypal model of genetic computation. It highlights the importance of criticality, at which many biological systems seem poised. In a series of advances, researchers have honed in on how the number of attractors…

Molecular Networks · Quantitative Biology 2023-06-05 T. M. A. Fink , F. C. Sheldon

The Kauffman model describes a system of randomly connected nodes with dynamics based on Boolean update functions. Though it is a simple model, it exhibits very complex behavior for "critical" parameter values at the boundary between a…

Disordered Systems and Neural Networks · Physics 2007-05-23 Barbara Drossel , Tamara Mihaljev , Florian Greil

The critical Kauffman model with connectivity one is the simplest class of critical Boolean networks. Nevertheless, it exhibits intricate behavior at the boundary of order and chaos. We introduce a formalism for expressing the dynamics of…

Statistical Mechanics · Physics 2023-04-03 T. M. A. Fink

This is the first of two papers about the structure of Kauffman networks. In this paper we define the relevant elements of random networks of automata, following previous work by Flyvbjerg and Flyvbjerg and Kjaer, and we study numerically…

Disordered Systems and Neural Networks · Physics 2009-10-30 U. Bastolla , G. Parisi

The Kauffman model describes a particularly simple class of random Boolean networks. Despite the simplicity of the model, it exhibits complex behavior and has been suggested as a model for real world network problems. We introduce a novel…

Disordered Systems and Neural Networks · Physics 2007-05-23 B. Samuelsson , C. Troein

Random networks are a powerful tool in the analytical modeling of complex networks as they allow us to write approximate mathematical models for diverse properties and behaviors of networks. One notable shortcoming of these models is that…

Physics and Society · Physics 2023-07-10 Laurent Hébert-Dufresne , Márton Pósfai , Antoine Allard

The growth in number and nature of dynamical attractors in Kauffman NK network models are still not well understood properties of these important random boolean networks. Structural circuits in the underpinning graph give insights into the…

Disordered Systems and Neural Networks · Physics 2007-11-16 K. A. Hawick , H. A. James , C. J. Scogings

The evaluation of the number of attractors in Kauffman networks by Samuelsson and Troein is generalized to critical networks with one input per node and to networks with two inputs per node and different probability distributions for update…

Statistical Mechanics · Physics 2009-11-11 Barbara Drossel

Several approaches to cognition and intelligence research rely on statistics-based models testing, namely factor analysis. In the present work we exploit the emerging dynamical systems perspective putting the focus on the role of the…

Physics and Society · Physics 2018-03-15 Gemma Rosell-Tarragó , Emanuele Cozzo , Albert Díaz-Guilera

We describe systems using Kauffman and similar networks. They are directed funct ioning networks consisting of finite number of nodes with finite number of discr ete states evaluated in synchronous mode of discrete time. In this paper we…

Disordered Systems and Neural Networks · Physics 2009-11-13 Andrzej Gecow

Computational materials design often profits from the fact that some complicated contributions are not calculated for the real material, but replaced by results of models. We turn this approximation into a very general and in principle…

Other Condensed Matter · Physics 2021-03-15 Marco Vanzini , Ayoub Aouina , Martin Panholzer , Matteo Gatti , Lucia Reining

There is a prevalent effort to achieve quantum-enhanced metrology using criticality. However, the extent to which estimation precision is enhanced through criticality still needs further exploration under the constraint of finite time…

Quantum Physics · Physics 2024-07-31 Rui Zhang , Wenkui Ding , Zhucheng Zhang , Lei Shao , Yuyu Zhang , Xiaoguang Wang

Quantum mechanics and information theory are among the most important scientific discoveries of the last century. Although these two areas initially developed separately it has emerged that they are in fact intimately related. In this…

Quantum Physics · Physics 2009-11-07 V. Vedral

We investigate how the choice of decision makers can be varied under the presence of risk and uncertainty. Our analysis is based on the approach we have previously applied to individual decision makers, which we now generalize to the case…

Physics and Society · Physics 2014-09-03 V. I. Yukalov , D. Sornette

We show that the mean number of attractors in a critical Boolean network under asynchronous stochastic update grows like a power law and that the mean size of the attractors increases as a stretched exponential with the system size. This is…

Disordered Systems and Neural Networks · Physics 2007-05-23 Florian Greil , Barbara Drossel

We derive mostly analytically the scaling behavior of the number of nonfrozen and relevant nodes in critical Kauffman networks (with two inputs per node) in the thermodynamic limit. By defining and analyzing a stochastic process that…

Statistical Mechanics · Physics 2009-11-11 Viktor Kaufman , Tamara Mihaljev , Barbara Drossel

Despite their apparent simplicity, random Boolean networks display a rich variety of dynamical behaviors. Much work has been focused on the properties and abundance of attractors. We here derive an expression for the number of attractors in…

Molecular Networks · Quantitative Biology 2007-05-23 Björn Samuelsson , Carl Troein

The "edge of chaos" phase transition in artificial neural networks is of renewed interest in light of recent evidence for criticality in brain dynamics. Statistical mechanics traditionally studied this transition with connectivity $k$ as…

Disordered Systems and Neural Networks · Physics 2019-07-17 Lorenz Baumgarten , Stefan Bornholdt

This work proposes and evaluates a novel approach to determine interesting categorical attributes for lists of entities. Once identified, such categories are of immense value to allow constraining (filtering) a current view of a user to…

Databases · Computer Science 2017-11-30 Koninika Pal , Sebastian Michel

Complexity theory as practiced by physicists and computational complexity theory as practiced by computer scientists both characterize how difficult it is to solve complex problems. Here it is shown that the parameters of a specific model…

Disordered Systems and Neural Networks · Physics 2013-05-29 S. N. Coppersmith
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