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The Bidirectional Encoder Representations from Transformers (BERT) model has achieved the state-of-the-art performance for many natural language processing (NLP) tasks. Yet, limited research has been contributed to studying its…

Computation and Language · Computer Science 2021-09-23 Zimin Wan , Chenchen Xu , Hanna Suominen

Radiologists produce unstructured data that can be valuable for clinical care when consumed by information systems. However, variability in style limits usage. Study compares system using domain-adapted language model (RadLing) and…

Since radiology reports needed for clinical practice and research are written and stored in free-text narrations, extraction of relative information for further analysis is difficult. In these circumstances, natural language processing…

Computation and Language · Computer Science 2022-09-27 Seyed Ali Reza Moezzi , Abdolrahman Ghaedi , Mojdeh Rahmanian , Seyedeh Zahra Mousavi , Ashkan Sami

Accurate and robust medical image segmentation is fundamental and crucial for enhancing the autonomy of computer-aided diagnosis and intervention systems. Medical data collection normally involves different scanners, protocols, and…

Image and Video Processing · Electrical Eng. & Systems 2023-06-07 An Wang , Mobarakol Islam , Mengya Xu , Hongliang Ren

The integration of artificial intelligence in healthcare has opened new horizons for improving medical diagnostics and patient care. However, challenges persist in developing systems capable of generating accurate and contextually relevant…

Computer Vision and Pattern Recognition · Computer Science 2026-02-16 Marco Salmè , Rosa Sicilia , Paolo Soda , Valerio Guarrasi

Background: Structured radiology reports remains underdeveloped due to labor-intensive structuring and narrative-style reporting. Deep learning, particularly large language models (LLMs) like GPT-3.5, offers promise in automating the…

Computation and Language · Computer Science 2024-10-30 Hidetoshi Matsuo , Mizuho Nishio , Takaaki Matsunaga , Koji Fujimoto , Takamichi Murakami

Clinical prediction is an essential task in the healthcare industry. However, the recent success of transformers, on which large language models are built, has not been extended to this domain. In this research, we explore the use of…

Computation and Language · Computer Science 2023-05-08 Zekai Chen , Mariann Micsinai Balan , Kevin Brown

Large Language Models(LLMs) are increasingly explored for cybersecurity applications such as vulnerability detection. In the domain of threat modelling, prior work has primarily evaluated a number of general-purpose Large Language Models…

Cryptography and Security · Computer Science 2026-05-12 Saba Pourhanifeh , AbdulAziz AbdulGhaffar , Ashraf Matrawy

Learning effective sentence representations is crucial for many Natural Language Processing (NLP) tasks, including semantic search, semantic textual similarity (STS), and clustering. While multiple transformer models have been developed for…

Computation and Language · Computer Science 2023-11-30 Liya Wang , Jason Chou , Dave Rouck , Alex Tien , Diane M Baumgartner

Deep learning (DL) has shown remarkable success in various medical imaging data analysis applications. However, it remains challenging for DL models to achieve good generalization, especially when the training and testing datasets are…

Image and Video Processing · Electrical Eng. & Systems 2023-11-06 Yuemeng Li , Yong Fan

Recently, pretrained language models based on BERT have been introduced for the French biomedical domain. Although these models have achieved state-of-the-art results on biomedical and clinical NLP tasks, they are constrained by a limited…

Computation and Language · Computer Science 2024-02-27 Adrien Bazoge , Emmanuel Morin , Beatrice Daille , Pierre-Antoine Gourraud

Large Language Models (LLMs), known for their versatility in textual data, are increasingly being explored for their potential to enhance medical image segmentation, a crucial task for accurate diagnostic imaging. This study explores…

Image and Video Processing · Electrical Eng. & Systems 2025-08-20 Gurucharan Marthi Krishna Kumar , Aman Chadha , Janine Mendola , Amir Shmuel

Population-based cancer registries depend on pathology reports as their primary diagnostic source, yet manual abstraction is resource-intensive and contributes to delays in cancer data. While transformer-based NLP systems have improved…

Computation and Language · Computer Science 2026-01-05 Jonathan Simkin , Lovedeep Gondara , Zeeshan Rizvi , Gregory Doyle , Jeff Dowden , Dan Bond , Desmond Martin , Raymond Ng

Vision-language models, while effective in general domains and showing strong performance in diverse multi-modal applications like visual question-answering (VQA), struggle to maintain the same level of effectiveness in more specialized…

Computation and Language · Computer Science 2024-04-26 Cuong Nhat Ha , Shima Asaadi , Sanjeev Kumar Karn , Oladimeji Farri , Tobias Heimann , Thomas Runkler

Several recent works seek to adapt general-purpose large language models (LLMs) and vision-language models (VLMs) for medical applications through continued pretraining on publicly available biomedical corpora. These works typically claim…

Computation and Language · Computer Science 2025-07-01 Daniel P. Jeong , Pranav Mani , Saurabh Garg , Zachary C. Lipton , Michael Oberst

Domain adaptive pretraining, i.e. the continued unsupervised pretraining of a language model on domain-specific text, improves the modelling of text for downstream tasks within the domain. Numerous real-world applications are based on…

Computation and Language · Computer Science 2021-09-15 Rasmus Kær Jørgensen , Mareike Hartmann , Xiang Dai , Desmond Elliott

Medical Foundation Models (MFMs), trained on large-scale datasets, have demonstrated superior performance across various tasks. However, these models still struggle with domain gaps in practical applications. Specifically, even after…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Jia-Xuan Jiang , Wenhui Lei , Yifeng Wu , Hongtao Wu , Furong Li , Yining Xie , Xiaofan Zhang , Zhong Wang

Deep learning (DL) based predictive models from electronic health records (EHR) deliver impressive performance in many clinical tasks. Large training cohorts, however, are often required to achieve high accuracy, hindering the adoption of…

Computation and Language · Computer Science 2020-05-27 Laila Rasmy , Yang Xiang , Ziqian Xie , Cui Tao , Degui Zhi

This paper addresses the domain adaptation challenge for semantic segmentation in medical imaging. Despite the impressive performance of recent foundational segmentation models like SAM on natural images, they struggle with medical domain…

Computer Vision and Pattern Recognition · Computer Science 2025-01-14 Javier Gamazo Tejero , Moritz Schmid , Pablo Márquez Neila , Martin S. Zinkernagel , Sebastian Wolf , Raphael Sznitman

A key component of deep learning (DL) for natural language processing (NLP) is word embeddings. Word embeddings that effectively capture the meaning and context of the word that they represent can significantly improve the performance of…