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Long DNA molecules can be mapped by cutting them with restriction enzymes inside a narrow channel. Once cut, the individual fragments thus produced move away from each other due to diffusion and entropic effects. We investigate how long it…

Soft Condensed Matter · Physics 2025-06-11 Hanyang. Wang , Gary W Slater

Diffusive transport of particles or, more generally, small objects is a ubiquitous feature of physical and chemical reaction systems. In configurations containing confining walls or constrictions transport is controlled both by the…

Statistical Mechanics · Physics 2009-01-22 P. Sekhar Burada , Peter Hanggi , Fabio Marchesoni , Gerhard Schmid , Peter Talkner

Diffusion of colloidal particles in a complex environment such as polymer networks or biological cells is a topic of high complexity with significant biological and medical relevance. In such situations, the interaction between the…

Statistical Mechanics · Physics 2015-11-10 Andreas M. Menzel

We apply macroscopic fluctuation theory to study the diffusion of a tracer in a one-dimensional interacting particle system with excluded mutual passage, known as single-file diffusion. In the case of Brownian point particles with hard-core…

Statistical Mechanics · Physics 2014-11-18 P. L. Krapivsky , Kirone Mallick , Tridib Sadhu

We study single-file diffusion on a one-dimensional lattice with a random fractal distribution of hopping rates. For finite lattices, this problem shows three clearly different regimes, namely, nearly independent particles, highly…

Statistical Mechanics · Physics 2017-03-08 L. Padilla , H. O. Mártin , J. L. Iguain

Diffusion in an evolving environment is studied by continuos-time Monte Carlo simulations. Diffusion is modelled by continuos-time random walkers on a lattice, in a dynamic environment provided by bubbles between two one-dimensional…

Soft Condensed Matter · Physics 2010-11-22 Janne Juntunen , Juha Merikoski

We study the statistics of a tagged particle in single-file diffusion, a one-dimensional interacting infinite-particle system in which the order of particles never changes. We compute the two-time correlation function for the displacement…

Statistical Mechanics · Physics 2016-04-18 P. L. Krapivsky , Kirone Mallick , Tridib Sadhu

The crossover from single-file diffusion, where the mean-square displacement scales as <x^2> ~t^(1/2), to normal Fickian diffusion, where <x^2>~t$, is studied as a function of channel width for colloidal particles. By comparing Brownian…

Soft Condensed Matter · Physics 2010-01-07 J. Sané , J. T. Padding , A. A. Louis

Single-file diffusion is a ubiquitous physical process exploited by living and synthetic systems to exchange molecules with their environment. It is paramount quantifying the escape time needed for single files of particles to exit from…

Soft Condensed Matter · Physics 2016-07-25 Emanuele Locatelli , Matteo Pierno , Fulvio Baldovin , Enzo Orlandini , Yizhou Tan , Stefano Pagliara

The single file diffusion in a circular channel of millimetric charged balls is studied. The evolution in time of the mean square displacement is shown to be subdiffusive, but slower than the power-like $t^{1/2}$ behavior observed in…

Statistical Mechanics · Physics 2007-05-23 Gwennou Coupier , Michel Saint Jean , Claudine Guthmann

We study the single file diffusion problem on a one-dimensional lattice with a self-similar distribution of hopping rates. We find that the time dependence of the mean-square displacement of both a tagged particle and the center of mass of…

Statistical Mechanics · Physics 2015-06-19 G. P. Suárez , H. O. Mártin , J. L. Iguain

Single-file diffusion is a theoretically challenging many-body problem where the calculation of even the simplest observables, e.g. mean square displacement, for a tracer particle requires a heavy mathematical machinery. There is therefore…

Statistical Mechanics · Physics 2015-06-15 Ludvig Lizana , Michael A. Lomholt , Tobias Ambjörnsson

We study 1-D diffusion of $N$ hard-core interacting Brownian particles driven by the space- and time-dependent external force. We give the exact solution of the $N$-particle Smoluchowski diffusion equation. In particular, we investigate the…

Statistical Mechanics · Physics 2012-03-06 Artem Ryabov , Petr Chvosta

The dynamics of hard-core interacting Brownian particles in an external potential field is studied in one dimension. Using the Jepsen line we find a very general and simple formula relating the motion of the tagged center particle, with the…

Statistical Mechanics · Physics 2010-04-22 E. Barkai , R. Silbey

Single-file diffusion (SFD) of an infinite one-dimensional chain of interacting particles has a long-time mean-square displacement (MSD) ~t^1/2, independent of the type of inter-particle repulsive interaction. This behavior is also observed…

Statistical Mechanics · Physics 2010-11-19 D. V. Tkachenko , V. R. Misko , F. M. Peeters

Anomalous short- and long-time self-diffusion of non-overlapping fractal particles on a percolation cluster with spreading dimension $1.67(2)$ is studied by dynamic Monte Carlo simulations. As reported in Phys. Rev. Lett. 115, 097801…

Computational Physics · Physics 2020-10-08 Marco Heinen

We numerically study structure and dynamics of single files composed of active particles, as well as, active-passive binary mixtures. Our simulation results show that when the persistent length of self-propelled particles is much larger…

Soft Condensed Matter · Physics 2023-03-15 Tanwi Debnath , Shubhadip Nayak , Poulami Bag , Debajyoti Debnath , Pulak Kumar Ghosh

In colloidal systems, Brownian motion emerges from the massive separation of time and length scales associated to characteristic dynamics of the solute and solvent constituents. This separation of scales produces several temporal regimes in…

We show that the diffusion of a single file of particles moving in a fluctuating modulated 1D channel is enhanced with respect to the one in a bald pipe. This effect, induced by the fluctuations of the modulation, is favored by the…

Statistical Mechanics · Physics 2009-11-11 Gwennou Coupier , Michel Saint Jean , Claudine Guthmann

Single-file diffusion (SFD) is a key mechanism underlying transport phenomena in confined physical and biological systems. In a typical SFD process, microscopic particles are restricted to moving in a narrow channel where they cannot pass…

Soft Condensed Matter · Physics 2025-05-28 A. Akintunde , P. Bayati , H. Row , S. A. Mallory