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Researchers have recently started investigating deep neural networks for dialogue applications. In particular, generative sequence-to-sequence (Seq2Seq) models have shown promising results for unstructured tasks, such as word-level dialogue…

Computation and Language · Computer Science 2016-11-21 Iulian Vlad Serban , Ryan Lowe , Laurent Charlin , Joelle Pineau

InterpretML is an open-source Python package which exposes machine learning interpretability algorithms to practitioners and researchers. InterpretML exposes two types of interpretability - glassbox models, which are machine learning models…

Machine Learning · Computer Science 2019-09-23 Harsha Nori , Samuel Jenkins , Paul Koch , Rich Caruana

To understand a narrative, it is essential to comprehend the temporal event flows, especially those associated with main characters; however, this can be challenging with lengthy and unstructured narrative texts. To address this, we…

Artificial Intelligence · Computer Science 2023-08-15 Guangxuan Xu , Paulina Toro Isaza , Moshi Li , Akintoye Oloko , Bingsheng Yao , Cassia Sanctos , Aminat Adebiyi , Yufang Hou , Nanyun Peng , Dakuo Wang

Summary: HTSeq 2.0 provides a more extensive API including a new representation for sparse genomic data, enhancements in htseq-count to suit single cell omics, a new script for data using cell and molecular barcodes, improved documentation,…

Genomics · Quantitative Biology 2021-12-03 Givanna H Putri , Simon Anders , Paul Theodor Pyl , John E Pimanda , Fabio Zanini

For machine learning models to be most useful in numerous sociotechnical systems, many have argued that they must be human-interpretable. However, despite increasing interest in interpretability, there remains no firm consensus on how to…

Machine Learning · Computer Science 2021-02-03 Andrew Slavin Ross , Nina Chen , Elisa Zhao Hang , Elena L. Glassman , Finale Doshi-Velez

Sequence alignments are fundamental to bioinformatics which has resulted in a variety of optimized implementations. Unfortunately, the vast majority of them are hand-tuned and specific to certain architectures and execution models. This not…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-17 André Müller , Bertil Schmidt , Andreas Hildebrandt , Richard Membarth , Roland Leißa , Matthis Kruse , Sebastian Hack

Text-editing models have recently become a prominent alternative to seq2seq models for monolingual text-generation tasks such as grammatical error correction, simplification, and style transfer. These tasks share a common trait - they…

We present iNLTK, an open-source NLP library consisting of pre-trained language models and out-of-the-box support for Data Augmentation, Textual Similarity, Sentence Embeddings, Word Embeddings, Tokenization and Text Generation in 13 Indic…

Computation and Language · Computer Science 2021-02-15 Gaurav Arora

We describe Sockeye (version 1.12), an open-source sequence-to-sequence toolkit for Neural Machine Translation (NMT). Sockeye is a production-ready framework for training and applying models as well as an experimental platform for…

Computation and Language · Computer Science 2018-06-04 Felix Hieber , Tobias Domhan , Michael Denkowski , David Vilar , Artem Sokolov , Ann Clifton , Matt Post

With the increasing application of deep learning algorithms to time series classification, especially in high-stake scenarios, the relevance of interpreting those algorithms becomes key. Although research in time series interpretability has…

Machine Learning · Computer Science 2022-08-16 Jacqueline Höllig , Cedric Kulbach , Steffen Thoma

We introduce fairseq S2T, a fairseq extension for speech-to-text (S2T) modeling tasks such as end-to-end speech recognition and speech-to-text translation. It follows fairseq's careful design for scalability and extensibility. We provide…

Computation and Language · Computer Science 2022-06-15 Changhan Wang , Yun Tang , Xutai Ma , Anne Wu , Sravya Popuri , Dmytro Okhonko , Juan Pino

The study of the attribution of input features to the output of neural network models is an active area of research. While numerous Explainable AI (XAI) techniques have been proposed to interpret these models, the systematic and automated…

Computation and Language · Computer Science 2026-03-13 Aria Nourbakhsh , Salima Lamsiyah , Adelaide Danilov , Christoph Schommer

Python has become the de-facto language for training deep neural networks, coupling a large suite of scientific computing libraries with efficient libraries for tensor computation such as PyTorch or TensorFlow. However, when models are used…

Machine Learning · Computer Science 2021-04-02 Zachary DeVito , Jason Ansel , Will Constable , Michael Suo , Ailing Zhang , Kim Hazelwood

Although deep language representations have become the dominant form of language featurization in recent years, in many settings it is important to understand a model's decision-making process. This necessitates not only an interpretable…

Computation and Language · Computer Science 2023-06-05 Victoria Lin , Louis-Philippe Morency

The analysis of DNA sequences has become critical in numerous fields, from evolutionary biology to understanding gene regulation and disease mechanisms. While deep neural networks can achieve remarkable predictive performance, they…

Machine Learning · Computer Science 2026-04-15 Nicolas Huynh , Krzysztof Kacprzyk , Ryan Sheridan , David Bentley , Mihaela van der Schaar

Copy mechanisms are employed in sequence to sequence models (seq2seq) to generate reproductions of words from the input to the output. These frameworks, operating at the lexical type level, fail to provide an explicit alignment that records…

Computation and Language · Computer Science 2020-10-30 Abhinav Singh , Patrick Xia , Guanghui Qin , Mahsa Yarmohammadi , Benjamin Van Durme

The time series classification literature has expanded rapidly over the last decade, with many new classification approaches published each year. The research focus has mostly been on improving the accuracy and efficiency of classifiers,…

Machine Learning · Computer Science 2018-08-14 Thach Le Nguyen , Severin Gsponer , Iulia Ilie , Georgiana Ifrim

Deep learning models generalize well to in-distribution data but struggle to generalize compositionally, i.e., to combine a set of learned primitives to solve more complex tasks. In sequence-to-sequence (seq2seq) learning, transformers are…

Machine Learning · Computer Science 2021-12-13 Luana Ruiz , Joshua Ainslie , Santiago Ontañón

Transliteration is a key component of machine translation systems and software internationalization. This paper demonstrates that neural sequence-to-sequence models obtain state of the art or close to state of the art results on existing…

Computation and Language · Computer Science 2016-11-01 Mihaela Rosca , Thomas Breuel

We describe a neural transducer that maintains the flexibility of standard sequence-to-sequence (seq2seq) models while incorporating hierarchical phrases as a source of inductive bias during training and as explicit constraints during…

Computation and Language · Computer Science 2022-11-17 Bailin Wang , Ivan Titov , Jacob Andreas , Yoon Kim