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Studies of active matter, from molecular assemblies to animal groups, have revealed two broad classes of behavior: a tendency to align yields orientational order and collective motion, whereas particle repulsion leads to self-trapping and…

Soft Condensed Matter · Physics 2021-11-23 Jie Zhang , Ricard Alert , Jing Yan , Ned S. Wingreen , Steve Granick

Many biological systems dynamically rearrange their components through a sequence of configurations in order to perform their functions. Such dynamic processes have been studied using network models that sequentially retrieve a set of…

Statistical Mechanics · Physics 2022-12-01 Lukas Herron , Pablo Sartori , BingKan Xue

Pattern formation from homogeneity is well-studied, but less is known concerning symmetry-breaking instabilities in heterogeneous media. It is nontrivial to separate observed spatial patterning due to inherent spatial heterogeneity from…

Pattern Formation and Solitons · Physics 2019-12-10 Andrew L. Krause , Václav Klika , Thomas E. Woolley , Eamonn A. Gaffney

Subcritical Turing bifurcations of reaction-diffusion systems in large domains lead to spontaneous onset of well-developed localised patterns via the homoclinic snaking mechanism. This phenomenon is shown to occur naturally when balancing…

Pattern Formation and Solitons · Physics 2025-06-10 Víctor Breña-Medina , Alan Champneys

The formation of dynamical patterns is one of the most striking features of nonequilibrium physical systems. Recent work has shown that such patterns arise generically from forces that violate Newton's third law, known as nonreciprocal…

Statistical Mechanics · Physics 2025-08-26 James Mason , Robert L. Jack , Maria Bruna

The emergence of a spatially-organized population distribution depends on the dynamics of the population and mediators of interaction (activators and inhibitors). Two broad classes of models have been used to investigate when and how…

Populations and Evolution · Quantitative Biology 2024-04-04 Eduardo H. Colombo , Ricardo Martinez-Garcia , Justin M. Calabrese , Cristóbal López , Emilio Hernández-García

We study pattern formation in a chemotaxis model of bacteria and soil carbon dynamics as an example system where transient dynamics can give rise to pattern formation outside of Turing unstable regimes. We use a detailed analysis of the…

The model of the physical system with discrete interactions is based on the postulates that (i) parameters of the physical system are defined in process of its interaction; (ii) the process of interaction is discrete. Consequently ordering…

Quantum Physics · Physics 2007-05-23 M Yudin

We propose a technique to detect and generate patterns in a network of locally interacting dynamical systems. Central to our approach is a novel spatial superposition logic, whose semantics is defined over the quad-tree of a partitioned…

Artificial Intelligence · Computer Science 2014-09-22 Ebru Aydin Gol , Ezio Bartocci , Calin Belta

How producers of public goods persist in microbial communities is a major question in evolutionary biology. Cooperation is evolutionarily unstable, since cheating strains can reproduce quicker and take over. Spatial structure has been shown…

Populations and Evolution · Quantitative Biology 2018-05-28 Gurdip Uppal , Dervis Can Vural

We investigate the emergent interactions between two active Brownian particles coupled by an attractive harmonic potential and in contact with a thermal reservoir. By analyzing the stationary distribution of their separation, we demonstrate…

Statistical Mechanics · Physics 2025-10-08 Ritwick Sarkar , Sreya Chatterjee , Urna Basu

Reduction of a two-component FitzHugh-Nagumo model to a single-component model with long-range connection is considered on general networks. The reduced model describes a single chemical species reacting on the nodes and diffusing across…

Pattern Formation and Solitons · Physics 2020-02-19 Timoteo Carletti , Hiroya Nakao

Dynamical properties of a few ultra-cold fermions confined in a double-well potential is studied. We show that the dynamics, which is governed by single-particle tunnelings for vanishing interactions, is completely different for strong…

Quantum Gases · Physics 2016-03-24 Tomasz Sowiński , Mariusz Gajda , Kazimierz Rzążewski

Nonreciprocal interactions violating Newton's third law are common in a plethora of nonequilibrium situations ranging from predator-prey systems to the swarming of birds and effective colloidal interactions under flow. While many recent…

Soft Condensed Matter · Physics 2025-10-07 Zhi-Feng Huang , Michael te Vrugt , Jonas Mayer Martins , Raphael Wittkowski , Hartmut Löwen

Computational models of collective behavior in birds has allowed us to infer interaction rules directly from experimental data. Using a generic form of these rules we explore the collective behavior and emergent dynamics of a simulated…

Adaptation and Self-Organizing Systems · Physics 2012-07-24 Michael Small , Xiaoke Xu

Tipping points are critical thresholds of parameters where tiny perturbations can lead to abrupt and large qualitative changes in the systems. Many real-world systems that exhibit tipping behavior can be represented as networks of…

Chaotic Dynamics · Physics 2025-09-10 Richita Ghosh , Manish Dev Shrimali

Common models of circadian rhythms are constructed as compartmental reactions of well mixed biochemicals involving a negative-feedback loop containing several intermediate reaction steps in order to enable oscillations. Spatial transport of…

Biological Physics · Physics 2023-03-22 Pablo Rojas , Oreste Piro , Martin E. Garcia

In this work we investigate the process of pattern formation in a two dimensional domain for a reaction-diffusion system with nonlinear diffusion terms and the competitive Lotka-Volterra kinetics. The linear stability analysis shows that…

Pattern Formation and Solitons · Physics 2014-03-03 G. Gambino , M. C. Lombardo , M. Sammartino

We investigate the replicator dynamics with "sparse" symmetric interactions which represent specialist-specialist interactions in ecological communities. By considering a large self interaction $u$, we conduct a perturbative expansion which…

Populations and Evolution · Quantitative Biology 2016-09-21 Tomoyuki Obuchi , Yoshiyuki Kabashima , Kei Tokita

Many biological and social systems show significant levels of collective action. Several cooperation mechanisms have been proposed, yet they have been mostly studied independently. Among these, direct reciprocity supports cooperation on the…

Populations and Evolution · Quantitative Biology 2021-04-15 Luis A. Martinez-Vaquero , Francisco C. Santos , Vito Trianni