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This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli

The proper thinness of a graph is an invariant that generalizes the concept of a proper interval graph. Every graph has a numerical value of proper thinness and the graphs with proper thinness~1 are exactly the proper interval graphs. A…

Combinatorics · Mathematics 2025-05-19 Flavia Bonomo-Braberman , Ignacio Maqueda , Nina Pardal

An identifying code of a graph is a dominating set which uniquely determines all the vertices by their neighborhood within the code. Whereas graphs with large minimum degree have small domination number, this is not the case for the…

Combinatorics · Mathematics 2017-01-02 Florent Foucaud , Guillem Perarnau , Oriol Serra

The sorting number of a graph with $n$ vertices is the minimum depth of a sorting network with $n$ inputs and outputs that uses only the edges of the graph to perform comparisons. Many known results on sorting networks can be stated in…

Data Structures and Algorithms · Computer Science 2022-03-22 Indranil Banerjee , Dana Richards , Igor Shinkar

In the distributed subgraph-freeness problem, we are given a graph $H$, and asked to determine whether the network graph contains $H$ as a subgraph or not. Subgraph-freeness is an extremely local problem: if the network had no bandwidth…

Data Structures and Algorithms · Computer Science 2017-11-21 Orr Fischer , Tzlil Gonen , Rotem Oshman

We consider the well-studied pattern counting problem: given a permutation $\pi \in \mathbb{S}_n$ and an integer $k > 1$, count the number of order-isomorphic occurrences of every pattern $\tau \in \mathbb{S}_k$ in $\pi$. Our first result…

Data Structures and Algorithms · Computer Science 2024-07-09 Gal Beniamini , Nir Lavee

Graph embedding methods are becoming increasingly popular in the machine learning community, where they are widely used for tasks such as node classification and link prediction. Embedding graphs in geometric spaces should aid the…

A {\it vertex-ordered} graph is a graph equipped with a linear ordering of its vertices. A pair of independent edges in an ordered graph can exhibit one of the following three patterns: separated, nested or crossing. We say a pair of…

Combinatorics · Mathematics 2025-12-23 János Barát , Andrea Freschi , Géza Tóth

Over the past two decades the main focus of research into first-order (FO) model checking algorithms has been on sparse relational structures - culminating in the FPT algorithm by Grohe, Kreutzer and Siebertz for FO model checking of…

Logic in Computer Science · Computer Science 2018-03-28 Petr Hliněný , Filip Pokrývka , Bodhayan Roy

An ordered matching of size $n$ is a graph on a linearly ordered vertex set $V$, $|V|=2n$, consisting of $n$ pairwise disjoint edges. There are three different ordered matchings of size two on $V=\{1,2,3,4\}$: an alignment…

Combinatorics · Mathematics 2024-04-25 Andrzej Dudek , Jarosław Grytczuk , Andrzej Ruciński

Many graph problems were first shown to be fixed-parameter tractable using the results of Robertson and Seymour on graph minors. We show that the combination of finite, computable, obstruction sets and efficient order tests is not just one…

Computational Complexity · Computer Science 2013-05-15 Michael R. Fellows , Bart M. P. Jansen

Minimal separators in graphs are an important concept in algorithmic graph theory. In particular, many problems that are NP-hard for general graphs are known to become polynomial-time solvable for classes of graphs with a polynomially…

Combinatorics · Mathematics 2019-06-03 Martin Milanič , Nevena Pivač

Finding communities in graphs is one of the most well-studied problems in data mining and social-network analysis. In many real applications, the underlying graph does not have a clear community structure. In those cases, selecting a single…

Data Structures and Algorithms · Computer Science 2019-02-06 Nikolaj Tatti , Aristides Gionis

In this study, we investigate the problem of classifying, characterizing, and designing efficient algorithms for hard inference problems on planar graphs, in the limit of infinite size. The problem is considered hard if, for a deterministic…

Statistics Theory · Mathematics 2016-01-01 Iuliana Teodorescu , Razvan Teodorescu , Pranav Warman

A hypergraph is a generalization of a graph, in which a hyperedge can connect multiple vertices, modeling complex relationships involving multiple vertices simultaneously. Hypergraph pattern matching, which is to find all isomorphic…

Databases · Computer Science 2025-12-23 Siwoo Song , Wonseok Shin , Kunsoo Park , Giuseppe F. Italiano , Zhengyi Yang , Wenjie Zhang

Finding dense subgraphs is a core problem in graph mining with many applications in diverse domains. At the same time many real-world networks vary over time, that is, the dataset can be represented as a sequence of graph snapshots. Hence,…

Data Structures and Algorithms · Computer Science 2023-08-31 Chamalee Wickrama Arachchi , Nikolaj Tatti

It is well-known that the graph isomorphism problem can be posed as an equivalent problem of determining whether an auxiliary graph structure contains a clique of specific order. However, the algorithms that have been developed so far for…

Data Structures and Algorithms · Computer Science 2019-10-29 Giannis Nikolentzos , Michalis Vazirgiannis

Knitting, an ancient fiber art, creates a structured fabric consisting of loops or stitches. Publishing hand knitting patterns involves lengthy testing periods and numerous knitters. Modeling knitting patterns with graphs can help expedite…

Human-Computer Interaction · Computer Science 2024-06-21 Kathryn Gray , Brian Bell , Stephen Kobourov

We study the design of fixed-parameter algorithms for problems already known to be solvable in polynomial time. The main motivation is to get more efficient algorithms for problems with unattractive polynomial running times. Here, we focus…

Computational Complexity · Computer Science 2021-01-06 Archontia C. Giannopoulou , George B. Mertzios , Rolf Niedermeier

We show that for a number of parameterized problems for which only $2^{O(k)} n^{O(1)}$ time algorithms are known on general graphs, subexponential parameterized algorithms with running time $2^{O(k^{1-\frac{1}{1+\delta}} \log^2 k)}…

Data Structures and Algorithms · Computer Science 2016-10-26 Dániel Marx , Marcin Pilipczuk