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Monoclonal antibodies (mAbs) have emerged as indispensable assets in medicine, and are currently at the forefront of biopharmaceutical product development. However, the growing market demand and the substantial doses required for mAb…

Machine Learning · Computer Science 2023-08-09 Sandra A. Obiri , Song Bo , Bernard T. Agyeman , Benjamin Decardi-Nelson , Jinfeng Liu

Monoclonal antibodies constitute one of the most important strategies to treat patients suffering from cancers such as hematological malignancies and solid tumors. In order to guarantee the quality of those preparations prepared at…

N-glycosylation is a critical quality attribute of monoclonal antibodies (mAbs), the dominant class of biopharmaceuticals. Controlling glycosylation remains difficult due to intrinsic pathway complexity, limited online measurements, and a…

Optimization and Control · Mathematics 2026-02-03 Yingjie Ma , Jing Guo , Alexis B. Dubs , Krystian K. Ganko , Richard D. Braatz

Ligand-receptor interactions are fundamental to many biological processes. For example in antibody-based immunotherapies, the dynamics of an antibody binding with its target antigen directly influence the potency and efficacy of monoclonal…

Other Quantitative Biology · Quantitative Biology 2025-01-17 Luke A Heirene , Helen M Byrne , James W T Yates , Eamonn A Gaffney

This paper addresses the challenges of predicting bioprocess performance, particularly in monoclonal antibody (mAb) production, where conventional statistical methods often fall short due to time-series data's complexity and high…

Machine Learning · Computer Science 2024-11-05 Ali Nik-Khorasani , Thanh Tung Khuat , Bogdan Gabrys

Glycosylation is a critical quality attribute for monoclonal antibody (mAb) production, influenced by both process conditions and cellular mechanisms. Multiscale mechanistic models, spanning from the bioreactor to the Golgi apparatus, have…

Numerical Analysis · Mathematics 2026-01-06 Yingjie Ma , Jing Guo , Andrew Maloney , Richard Braatz

We consider the optimization of a chemical microchannel reactor by means of PDE constrained optimization techniques, using the example of the Sabatier reaction. To model the chemically reacting flow in the microchannels, we introduce a…

Optimization and Control · Mathematics 2025-10-14 Sebastian Blauth , Christian Leithäuser , René Pinnau

Concentrated solutions of monoclonal antibodies have attracted considerable attention due to their importance in pharmaceutical formulations, yet their tendency to aggregate and the resulting high solution viscosity has posed considerable…

We apply three machine learning strategies to optimize the atomic cooling processes utilized in the production of a Bose-Einstein condensate (BEC). For the first time, we optimize both laser cooling and evaporative cooling mechanisms…

Since the approval of the first antibody drug in 1986, a total of 162 antibodies have been approved for a wide range of therapeutic areas, including cancer, autoimmune, infectious, or cardiovascular diseases. Despite advances in…

Biomolecules · Quantitative Biology 2024-11-21 Paul Pereira , Hervé Minoux , Aleksandra M. Walczak , Thierry Mora

We present a new mathematical model of colorectal cancer growth and its response to monoclonal-antibody (mAb) therapy. Although promising, most mAb drugs are still in trial phases, and the possible variations in the dosing schedules of…

Cell Behavior · Quantitative Biology 2013-12-12 L. G. dePillis , H. Savage , A. E. Radunskaya

We report on the application of an evolutionary algorithm (EA) to enhance performance of an ultra-cold quantum gas experiment. The production of a $^{87}$Rubidium Bose-Einstein condensate (BEC) can be divided into fundamental cooling steps,…

With the continuous increase in the penetration of renewable energy in the emerging power systems, the pressure on system peak regulation has been significantly intensified. Against this backdrop, demand side resources particularly air…

Systems and Control · Electrical Eng. & Systems 2025-08-15 Jinhua He , Tingzhe Pan , Chao Li , Xin Jin , Zijie Meng , Wei Zhou

The regulation of metabolic activity by tuning enzyme expression levels is crucial to sustain cellular growth in changing environments. Metabolic networks are often studied at steady state using constraint-based models and optimization…

Molecular Networks · Quantitative Biology 2014-10-24 Steffen Waldherr , Diego A. Oyarzún , Alexander Bockmayr

The study of monoclonal antibodies (MAb) is a field of great interest to science medicine, for example, anti-TNF agents (infliximab and adalimumab) represent an important tool for the management of autoimmune and inflammatory disorders. In…

Biological Physics · Physics 2010-09-27 Camilo Delgado-Correal , Carolina Daza , Heidy Alexandra Lizarazo-Pérez

The generation of cold atom clouds is a complex process which involves the optimization of noisy data in high dimensional parameter spaces. Optimization can be challenging both in and especially outside of the lab due to lack of time,…

The paper proposes a modular-based approach to constraint handling in process optimization and control. This is partly motivated by the recent interest in learning-based methods, e.g., within bioproduction, for which constraint handling…

Systems and Control · Electrical Eng. & Systems 2026-01-21 Yu Wang , Xiao Chen , Hubert Schwarz , Véronique Chotteau , Elling W. Jacobsen

Many important physical processes have dynamics that are too complex to completely model analytically. Optimisation of such processes often relies on intuition, trial-and-error, or the construction of empirical models. Machine learning…

In this paper, we present a novel kinetic growth model for the micro-organism \textit{Methylococcus capsulatus} (Bath) that couples growth and pH. We apply growth kinetics in a model for single-cell protein production in a laboratory-scale…

Direct-drive is an important approach to achieving the ignition of inertial confinement fusion. To enhance implosion performance while keeping the risk of hydrodynamic instability at a low level, we have designed a procedure to optimize the…

Plasma Physics · Physics 2022-09-07 Guannan Zheng , Tao Tao , Qing Jia , Rui Yan , Jian Zheng
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