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Encoding information in combinations of pre-synthesised deoxyribonucleic acid (DNA) strands (referred to as motifs) is an interesting approach to DNA storage that could potentially circumvent the prohibitive costs of…

Information Theory · Computer Science 2024-12-05 Roman Sokolovskii , Parv Agarwal , Luis Alberto Croquevielle , Zijian Zhou , Thomas Heinis

In recent years, the emergence of DNA storage systems has led to a widespread focus on the research of codes correcting insertions, deletions, and classic substitutions. During the initial investigation, Levenshtein discovered the VT codes…

Information Theory · Computer Science 2024-01-23 Yuhang Pi , Zhifang Zhang

We consider the problem of determining the zero-error list-decoding capacity of the $q/(q-1)$ channel studied by Elias (1988). The $q/(q-1)$ channel has input and output alphabet consisting of $q$ symbols, say, $Q = \{x_1,x_2,\ldots,…

Information Theory · Computer Science 2018-02-26 Siddharth Bhandari , Jaikumar Radhakrishnan

This paper studies the problem of reconstructing a word given several of its noisy copies. This setup is motivated by several applications, among them is reconstructing strands in DNA-based storage systems. Under this paradigm, a word is…

Information Theory · Computer Science 2020-01-17 Omer Sabary , Eitan Yaakobi , Alexander Yucovich

Motivated by the sequence reconstruction problem initiated by Levenshtein, reconstruction codes were introduced by Cai \emph{et al}. to combat errors when a fixed number of noisy channels are available. The central problem on this topic is…

Information Theory · Computer Science 2022-07-05 Rongsheng Wu , Xiande Zhang

Consider two remote nodes (encoder and decoder), each with a binary sequence. The encoder's sequence $X$ differs from the decoder's sequence $Y$ by a small number of edits (deletions and insertions). The goal is to construct a message $M$,…

Information Theory · Computer Science 2020-10-28 Mahed Abroshan , Ramji Venkataramanan , Albert Guillen i Fabregas

This work investigates the fundamental limits of communication over a noisy discrete memoryless channel that wears out, in the sense of signal-dependent catastrophic failure. In particular, we consider a channel that starts as a memoryless…

Information Theory · Computer Science 2018-08-07 Ting-Yi Wu , Lav R. Varshney , Vincent Y. F. Tan

This paper addresses fundamental challenges in two-dimensional error correction by constructing optimal codes for \emph{criss-cross deletions}. We consider an $ n \times n $ array $\boldsymbol{X}$ over a $ q $-ary alphabet $\Sigma_q := \{0,…

Information Theory · Computer Science 2025-10-23 Yubo Sun , Gennian Ge

We consider the source-channel separation architecture for lossy source coding in communication networks. It is shown that the separation approach is optimal in two general scenarios, and is approximately optimal in a third scenario. The…

Information Theory · Computer Science 2013-12-04 Chao Tian , Jun Chen , Suhas Diggavi , Shlomo Shamai

A covering code is a set of codewords with the property that the union of balls, suitably defined, around these codewords covers an entire space. Generally, the goal is to find the covering code with the minimum size codebook. While most…

Information Theory · Computer Science 2020-05-26 Andreas Lenz , Cyrus Rashtchian , Paul H. Siegel , Eitan Yaakobi

It is well known that separation between lossy source coding and channel coding is asymptotically optimal under classical additive distortion measures. Recently, coding under a new class of quality considerations, often referred to as…

Information Theory · Computer Science 2025-07-02 Chao Tian , Jun Chen , Krishna Narayanan

In this paper the cognitive interference channel with a common message, a variation of the classical cognitive interference channel in which the cognitive message is decoded at both receivers, is studied. For this channel model new outer…

Information Theory · Computer Science 2012-08-21 Stefano Rini , Carolin Huppert

A central question in information theory is to determine the maximum success probability that can be achieved in sending a fixed number of messages over a noisy channel. This was first studied in the pioneering work of Shannon who…

Information Theory · Computer Science 2018-06-25 Siddharth Barman , Omar Fawzi

The fundamental limit of Semantic Communications (joint source-channel coding) is established when the transmission needs to be kept covert from an external warden. We derive information-theoretic achievability and matching converse results…

Information Theory · Computer Science 2024-06-21 Abdelaziz Bounhar , Mireille Sarkiss , Michèle Wigger

We study the problem of achieving strong secrecy over wiretap channels at negligible cost, in the sense of maintaining the overall communication rate of the same channel without secrecy constraints. Specifically, we propose and analyze two…

Information Theory · Computer Science 2016-12-06 Remi A. Chou , Badri Vellambi , Matthieu Bloch , Joerg Kliewer

Molecular codes translate information written in one type of molecules into another molecular language. We introduce a simple model that treats molecular codes as noisy information channels. An optimal code is a channel that conveys…

Quantitative Methods · Quantitative Biology 2010-07-26 Tsvi Tlusty

We examine the issue of separation and code design for networks that operate over finite fields. We demonstrate that source-channel (or source-network) separation holds for several canonical network examples like the noisy multiple access…

Information Theory · Computer Science 2007-07-13 Siddharth Ray , Michelle Effros , Muriel Medard , Ralf Koetter , Tracey Ho , David Karger , Jinane Abounadi

In distributed communication, each transmitter prepares an ensemble of channel codes. To encode a message, a transmitter chooses a channel code individually without sharing the coding choice with other transmitters or with the receiver.…

Information Theory · Computer Science 2018-05-08 Yanru Tang , Faeze Heydaryan , Jie Luo

Varshamov-Tenengolts (VT) codes are a class of codes which can correct a single deletion or insertion with a linear-time decoder. This paper addresses the problem of efficient encoding of non-binary VT codes, defined over an alphabet of…

Information Theory · Computer Science 2018-04-30 Mahed Abroshan , Ramji Venkataramanan , Albert Guillen i Fabregas

This paper proposes a novel deep learning-based error correction coding scheme for AWGN channels under the constraint of one-bit quantization in the receivers. Specifically, it is first shown that the optimum error correction code that…

Information Theory · Computer Science 2019-09-27 Eren Balevi , Jeffrey G. Andrews