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Chemical reaction networks can be automatically generated from graph grammar descriptions, where rewrite rules model reaction patterns. Because a molecule graph is connected and reactions in general involve multiple molecules, the rewriting…
We introduce SciEvalKit, a unified benchmarking toolkit designed to evaluate AI models for science across a broad range of scientific disciplines and task capabilities. Unlike general-purpose evaluation platforms, SciEvalKit focuses on the…
Survival analysis, a foundational tool for modeling time-to-event data, has seen growing integration with machine learning (ML) approaches to handle the complexities of censored data and time-varying risks. Despite these advances,…
Large language model agents have made strong progress on software engineering, yet current systems suffer from a context coupling problem: the standard code editing interface conflates code inspection, modification planning, and edit…
Autonomous systems for software engineering are now capable of fixing bugs and developing features. These systems are commonly evaluated on SWE-bench (Jimenez et al., 2024a), which assesses their ability to solve software issues from GitHub…
We present Cryptomite, a Python library of randomness extractor implementations. The library offers a range of two-source, seeded and deterministic randomness extractors, together with parameter calculation modules, making it easy to use…
Recent surge in Large Language Model (LLM) availability has opened exciting avenues for research. However, efficiently interacting with these models presents a significant hurdle since LLMs often reside on proprietary or self-hosted API…
Cyanure is an open-source C++ software package with a Python interface. The goal of Cyanure is to provide state-of-the-art solvers for learning linear models, based on stochastic variance-reduced stochastic optimization with acceleration…
GEANT4 is a particle physics simulation tool used to develop and optimize radiation detectors. While C++ based examples exist, Python's growing popularity necessitates the development of a more accessible Python bindings interface. This…
The wavelet scattering transform is an invariant signal representation suitable for many signal processing and machine learning applications. We present the Kymatio software package, an easy-to-use, high-performance Python implementation of…
Understanding chemical modifications on proteins opens up further possibilities for research on rare diseases. This work proposes visualization approaches using two-dimensional (2D) and three-dimensional (3D) visual representations to…
We introduce MixtureKit, a modular open-source framework for constructing, training, and analyzing Mixture-of-Experts (MoE) models from arbitrary pre-trained or fine-tuned models. MixtureKit currently supports three complementary methods:…
GitHub Copilot is an artificial intelligence model for automatically generating source code from natural language problem descriptions. Since June 2022, Copilot has officially been available for free to all students as a plug-in to…
In the trend towards hardware specialization, FPGAs play a dual role as accelerators for offloading, e.g., network virtualization, and as a vehicle for prototyping and exploring hardware designs. While FPGAs offer versatility and…
In this paper, we present Coyote C++, a fully automated white-box unit testing tool for C and C++. Whereas existing tools have struggled to realize unit test generation for C++, Coyote C++ is able to produce high coverage results from unit…
Large Language Models (LLMs) have demonstrated remarkable capabilities in challenging, knowledge-intensive reasoning tasks. However, extending LLMs to perceive and reason over a new modality (e.g., vision), often requires costly development…
The current INFRAWEBS European research project aims at developing ICT framework enabling software and service providers to generate and establish open and extensible development platforms for Web Service applications. One of the concrete…
Academic researchers face challenges keeping up with exponentially growing published findings in their field. Performing comprehensive literature reviews to synthesize knowledge is time-consuming and labor-intensive using manual approaches.…
We present nbodykit, an open-source, massively parallel Python toolkit for analyzing large-scale structure (LSS) data. Using Python bindings of the Message Passing Interface (MPI), we provide parallel implementations of many commonly used…
KBSET is an environment that provides support for scholarly editing in two flavors: First, as a practical tool KBSET/Letters that accompanies the development of editions of correspondences (in particular from the 18th and 19th century),…