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The complexity and size of state-of-the-art cell models have significantly increased in part due to the requirement that these models possess complex cellular functions which are thought--but not necessarily proven--to be important. Modern…

Neurons and Cognition · Quantitative Biology 2018-11-22 J. L. Hart , P. A. Gremaud , T. David

This work presents a Bayesian inference study for relativistic heavy-ion collisions in the Beam Energy Scan program at the Relativistic Heavy-Ion Collider. The theoretical model simulates event-by-event (3+1)D collision dynamics using…

Nuclear Theory · Physics 2026-02-03 Syed Afrid Jahan , Hendrik Roch , Chun Shen

Every computer model depends on numerical input parameters that are chosen according to mostly conservative but rigorous numerical or empirical estimates. These parameters could for example be the step size for time integrators, a seed for…

Computational Physics · Physics 2020-09-11 Matthias Frey , Andreas Adelmann

When matter is exposed to a high-intensity x-ray free-electron-laser pulse, the x rays excite inner-shell electrons leading to the ionization of the electrons through various atomic processes and creating high-energy-density plasma, i.e.,…

Atomic and Molecular Clusters · Physics 2017-08-24 Malik Muhammad Abdullah , Anurag , Zoltan Jurek , Sang-Kil Son , Robin Santra

Sensitivity analysis is a cornerstone of climate science, essential for understanding phenomena ranging from storm intensity to long-term climate feedbacks. However, computing these sensitivities using traditional physical models is often…

In this work we analyze two classes of Density-Estimation techniques which can be used to consistently couple different kinetic models of the plasma-material interface, intended as the region of plasma immediately interacting with the first…

Computational Physics · Physics 2018-04-12 Shane Keniley , Davide Curreli

Morphogenesis is a developmental process in which cells organize into shapes and patterns. Complex, multi-factorial models are commonly used to study morphogenesis. It is difficult to understand the relation between the uncertainty in the…

Cell Behavior · Quantitative Biology 2015-11-25 Sonja E. M. Boas , Maria I. Navarro Jimenez , Roeland M. H. Merks , Joke G. Blom

Materials used in commercial D-T fusion reactors will be exposed to irradiation and a mixture of helium and hydrogen plasma. Modeling the microstructural evolution of such materials requires the use of large-scale molecular dynamics…

The edge density and temperature of tokamak plasmas are strongly correlated with energy and particle confinement and their quantification is fundamental to understanding edge dynamics. These quantities exhibit behaviours ranging from sharp…

Plasma Physics · Physics 2022-01-05 Abhilash Mathews , Jerry Hughes

There are many interesting physical processes which involve the generation of high density plasmas in large volumes. However, when modeling these systems numerically, the large densities and volumes present a significant computational…

Computational Physics · Physics 2007-05-23 A. E. Schulz , A. D. Greenwood , K. L. Cartwright , P. J. Mardahl

Contrails have recently gained widespread attention due to their large and uncertain estimates of effective radiative forcing, i.e., warming effect on the planet, comparable to those of carbon dioxide. To study this aircraft-induced cloud…

Fluid Dynamics · Physics 2025-05-27 Tânia S. C. Ferreira , Juan J. Alonso , Catherine Gorlé

We present a multiscale hybrid particle-field scheme for the simulation of relaxation and diffusion behavior of soft condensed matter systems. It combines particle-based Brownian dynamics and field-based local dynamics in an adaptive sense…

Soft Condensed Matter · Physics 2017-09-06 Shuanhu Qi , Friederike Schmid

An accelerated analysis method for non-uniform metasurfaces in FDTD is presented for the first time. The non-uniform metasurfaces are modeled by a distribution of susceptibilities, homogenized parameters. Those susceptibilities are…

Computational Physics · Physics 2018-09-18 Xiao Jia , Maokun Li , Shenheng Xu , Christophe Caloz , Fan Yang

The role of turbulence in setting boundary plasma conditions is presently a key uncertainty in projecting to fusion energy reactors. To robustly diagnose edge turbulence, we develop and demonstrate a technique to translate brightness…

We describe gas dynamic and plasma effects for transient plasma jets under different conditions. Our Unified Flow Solver (UFS) is evaluated for simulations of mixed continuum-rarefied flows, transient gas expansion dynamics and…

Computational Physics · Physics 2019-06-05 Robert R. Arslanbekov , Vladimir I. Kolobov

The global coronal model COCONUT was originally developed to replace models such as the WSA model in space weather forecasting to improve the physical accuracy of the predictions. This model has, however, several simplifications implemented…

Solar and Stellar Astrophysics · Physics 2023-08-31 Michaela Brchnelova , Błażej Kuźma , Fan Zhang , Andrea Lani , Stefaan Poedts

Understanding the behavior and evolution of a dynamical many-body system by analyzing patterns in their experimentally captured images is a promising method relevant for a variety of living and non-living self-assembled systems. The arrays…

Learning how to safely handle Plasma-Material Interaction (PMI) is a key challenge towards the commercialisation of energy from nuclear fusion. In this respect, linear plasma devices are ideal experimental testbeds, and numerical codes play…

Plasma Physics · Physics 2025-01-16 F. Mombelli , G. Alberti , E. Tonello , C. Tuccari , A. Uccello , C. Baumann , X. Bonnin , J. Romazanov , M. Passoni

As the number of known exoplanets has climbed into the thousands, efforts by theorists to understand the diversity of climates that may exist on terrestrial planets in the habitable zone have also accelerated. These efforts have ranged from…

Earth and Planetary Astrophysics · Physics 2020-12-23 Adiv Paradise , Bo Lin Fan , Evelyn Macdonald , Kristen Menou , Christopher Lee