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Optical microscopy is an indispensable tool in life sciences research, but conventional techniques require compromises between imaging parameters like speed, resolution, field-of-view, and phototoxicity. To overcome these limitations,…

Quantitative Methods · Quantitative Biology 2024-04-01 Leonor Morgado , Estibaliz Gómez-de-Mariscal , Hannah S. Heil , Ricardo Henriques

Light microscopy allows observing cellular features and objects with sub-micrometer resolution. As such, light microscopy has been playing a fundamental role in the life sciences for more than a hundred years. Fueled by the availability of…

Other Quantitative Biology · Quantitative Biology 2021-10-28 Johannes Hohlbein , Benedict Diederich , Barbora Marsikova , Emmanuel G. Reynaud , Seamus Holden , Wiebke Jahr , Robert Haase , Kirti Prakash

In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scientists from academia and industry who share a common…

Other Quantitative Biology · Quantitative Biology 2021-08-17 Glyn Nelson , Ulrike Boehm , Steve Bagley , Peter Bajcsy , Johanna Bischof , Claire M Brown , Aurelien Dauphin , Ian M Dobbie , John E Eriksson , Orestis Faklaris , Julia Fernandez-Rodriguez , Alexia Ferrand , Laurent Gelman , Ali Gheisari , Hella Hartmann , Christian Kukat , Alex Laude , Miso Mitkovski , Sebastian Munck , Alison J North , Tobias M Rasse , Ute Resch-Genger , Lucas C Schuetz , Arne Seitz , Caterina Strambio-De-Castillia , Jason R Swedlow , Ioannis Alexopoulos , Karin Aumayr , Sergiy Avilov , Gert-Jan Bakker , Rodrigo R Bammann , Andrea Bassi , Hannes Beckert , Sebastian Beer , Yury Belyaev , Jakob Bierwagen , Konstantin A Birngruber , Manel Bosch , Juergen Breitlow , Lisa A Cameron , Joe Chalfoun , James J Chambers , Chieh-Li Chen , Eduardo Conde-Sousa , Alexander D Corbett , Fabrice P Cordelieres , Elaine Del Nery , Ralf Dietzel , Frank Eismann , Elnaz Fazeli , Andreas Felscher , Hans Fried , Nathalie Gaudreault , Wah Ing Goh , Thomas Guilbert , Roland Hadleigh , Peter Hemmerich , Gerhard A Holst , Michelle S Itano , Claudia B Jaffe , Helena K Jambor , Stuart C Jarvis , Antje Keppler , David Kirchenbuechler , Marcel Kirchner , Norio Kobayashi , Gabriel Krens , Susanne Kunis , Judith Lacoste , Marco Marcello , Gabriel G Martins , Daniel J Metcalf , Claire A Mitchell , Joshua Moore , Tobias Mueller , Michael S Nelson , Stephen Ogg , Shuichi Onami , Alexandra L Palmer , Perrine Paul-Gilloteaux , Jaime A Pimentel , Laure Plantard , Santosh Podder , Elton Rexhepaj , Arnaud Royon , Markku A Saari , Damien Schapman , Vincent Schoonderwoert , Britta Schroth-Diez , Stanley Schwartz , Michael Shaw , Martin Spitaler , Martin T Stoeckl , Damir Sudar , Jeremie Teillon , Stefan Terjung , Roland Thuenauer , Christian D Wilms , Graham D Wright , Roland Nitschke

Biological research spans scales and methodologies, generating complex data visualizations such as images, text, numbers, networks, and maps. With increasingly large and multimodal datasets, effective visualization is essential for…

Human-Computer Interaction · Computer Science 2024-08-30 Helena Klara Jambor

Deep learning has received extensive research interest in developing new medical image processing algorithms, and deep learning based models have been remarkably successful in a variety of medical imaging tasks to support disease detection…

Computer Vision and Pattern Recognition · Computer Science 2022-04-12 Xuxin Chen , Ximin Wang , Ke Zhang , Kar-Ming Fung , Theresa C. Thai , Kathleen Moore , Robert S. Mannel , Hong Liu , Bin Zheng , Yuchen Qiu

Microscopy image enhancement plays a pivotal role in understanding the details of biological cells and materials at microscopic scales. In recent years, there has been a significant rise in the advancement of microscopy image enhancement,…

Image and Video Processing · Electrical Eng. & Systems 2025-09-29 Debasish Dutta , Neeharika Sonowal , Risheraj Barauh , Deepjyoti Chetia , Sanjib Kr Kalita

Image Processing, Optimization and Prediction of an Image play a key role in Computer Science. Image processing provides a way to analyze and identify an image .Many areas like medical image processing, Satellite images, natural images and…

Computer Vision and Pattern Recognition · Computer Science 2013-05-14 Shweta Jain , Urmila Shrawankar

With the rapid advancement of artificial intelligence and deep learning, medical image analysis has become a critical tool in modern healthcare, significantly improving diagnostic accuracy and efficiency. However, AI-based methods also…

Computer Vision and Pattern Recognition · Computer Science 2024-12-06 Yanming Zhu , Xuefei Yin , Alan Wee-Chung Liew , Hui Tian

The fast-growing field of soft matter research requires increasingly sophisticated tools for experimental studies. One of the oldest and most widely used tools to study soft matter systems is optical microscopy. Recent advances in optical…

Soft Condensed Matter · Physics 2011-08-17 Taewoo Lee , Bohdan Senyuk , Rahul P. Trivedi , Ivan I. Smalyukh

The analysis of microcirculation images has the potential to reveal early signs of life-threatening diseases like sepsis. Quantifying the capillary density and the capillary distribution in microcirculation images can be used as a…

Computer Vision and Pattern Recognition · Computer Science 2022-05-12 Maged Abdalla Helmy Mohamed Abdou , Trung Tuyen Truong , Eric Jul , Paulo Ferreira

There has been a consistent growth in research involving imaging of microvasculature over the past few decades. By 2008, publications mentioning the microcirculation had grown more than 2000 per annum. Many techniques have been demonstrated…

Medical Physics · Physics 2019-07-04 Cerine Lal , Martin J Leahy

Multidimensional imaging techniques provide powerful ways to examine various kinds of scientific questions. The routinely produced datasets in the terabyte-range, however, can hardly be analyzed manually and require an extensive use of…

Computer Vision and Pattern Recognition · Computer Science 2016-08-31 Johannes Stegmaier

Medical image enhancement is crucial for improving the quality and interpretability of diagnostic images, ultimately supporting early detection, accurate diagnosis, and effective treatment planning. Despite advancements in imaging…

Computer Vision and Pattern Recognition · Computer Science 2025-10-21 Chun Wai Chin , Haniza Yazid , Hoi Leong Lee

The future of bioimage analysis is increasingly defined by the development and use of tools that rely on deep learning and artificial intelligence (AI). For this trend to continue in a way most useful for stimulating scientific progress, it…

Other Quantitative Biology · Quantitative Biology 2023-08-31 Damian Edward Dalle Nogare , Matthew Hartley , Joran Deschamps , Jan Ellenberg , Florian Jug

Nowadays, the amount of heterogeneous biomedical data is increasing more and more thanks to novel sensing techniques and high-throughput technologies. In reference to biomedical image analysis, the advances in image acquisition modalities…

Image and Video Processing · Electrical Eng. & Systems 2021-06-09 Leonardo Rundo

This paper presents a systematic literature review of image datasets for document image analysis, focusing on historical documents, such as handwritten manuscripts and early prints. Finding appropriate datasets for historical document…

Computer Vision and Pattern Recognition · Computer Science 2022-11-01 Konstantina Nikolaidou , Mathias Seuret , Hamam Mokayed , Marcus Liwicki

Motivation: Medical image analysis involves tasks to assist physicians in qualitative and quantitative analysis of lesions or anatomical structures, significantly improving the accuracy and reliability of diagnosis and prognosis.…

Computer Vision and Pattern Recognition · Computer Science 2022-06-30 Mingzhe Hu , Jiahan Zhang , Luke Matkovic , Tian Liu , Xiaofeng Yang

Medical imaging informatics is a rapidly growing field that combines the principles of medical imaging and informatics to improve the acquisition, management, and interpretation of medical images. This chapter introduces the basic concepts…

Image and Video Processing · Electrical Eng. & Systems 2023-06-21 Md. Zihad Bin Jahangir , Ruksat Hossain , Riadul Islam , MD Abdullah Al Nasim , Md. Mahim Anjum Haque , Md Jahangir Alam , Sajedul Talukder

Providing visual summaries of scientific publications can increase information access for readers and thereby help deal with the exponential growth in the number of scientific publications. Nonetheless, efforts in providing visual…

Information Retrieval · Computer Science 2021-01-15 Shintaro Yamamoto , Anne Lauscher , Simone Paolo Ponzetto , Goran Glavaš , Shigeo Morishima

Image processing is one of the most immerging and widely growing techniques making it a lively research field. Image processing is converting an image to a digital format and then doing different operations on it, such as improving the…

Computer Vision and Pattern Recognition · Computer Science 2022-07-15 Bhishman Desai , Manish Paliwal , Kapil Kumar Nagwanshi