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We characterize different cell states, related to cancer and ageing phenotypes, by a measure of entropy of network ensembles, integrating gene expression values and protein interaction networks. The entropy measure estimates the parameter…

Molecular Networks · Quantitative Biology 2013-05-24 G. Menichetti , G. Bianconi , E. Giampieri , G. Castellani , D. Remondini

Deep neural network (DNN) deployment has been confined to larger hardware devices due to their expensive computational requirements. This challenge has recently reached another scale with the emergence of large language models (LLMs). In…

Machine Learning · Computer Science 2023-08-11 Edouard Yvinec , Arnaud Dapogny , Kevin Bailly

Convolutional Neural Networks (CNNs) are widely assumed to be translation-invariant, yet standard architectures exhibit a startling fragility: even a single-pixel shift can drastically degrade performance due to their reliance on spatially…

Computer Vision and Pattern Recognition · Computer Science 2026-05-01 Nuria Alabau-Bosque , Jorge Vila-Tomas , Paula Dauden-Oliver , Valero Laparra , Jesus Malo

In comparison to classical shallow representation learning techniques, deep neural networks have achieved superior performance in nearly every application benchmark. But despite their clear empirical advantages, it is still not well…

Machine Learning · Computer Science 2022-01-11 Calvin Murdock , George Cazenavette , Simon Lucey

Deep learning models have witnessed depth and pose estimation framework on unannotated datasets as a effective pathway to succeed in endoscopic navigation. Most current techniques are dedicated to developing more advanced neural networks to…

Computer Vision and Pattern Recognition · Computer Science 2023-09-15 Junyang Wu , Yun Gu

Many studies estimate energy consumption using proxy metrics like memory usage, FLOPs, and inference latency, with the assumption that reducing these metrics will also lower energy consumption in neural networks. This paper, however, takes…

Machine Learning · Computer Science 2025-04-14 Hoang-Loc La , Phuong Hoai Ha

Deep neural networks (DNNs) have shown to provide superb performance in many real life applications, but their large computation cost and storage requirement have prevented them from being deployed to many edge and internet-of-things (IoT)…

Neural and Evolutionary Computing · Computer Science 2021-12-22 Minghai Qin , Tianyun Zhang , Fei Sun , Yen-Kuang Chen , Makan Fardad , Yanzhi Wang , Yuan Xie

Deep neural networks (DNNs) are susceptible to Universal Adversarial Perturbations (UAPs), which are instance agnostic perturbations that can deceive a target model across a wide range of samples. Unlike instance-specific adversarial…

Machine Learning · Computer Science 2025-03-31 YangTian Yan , Jinyu Tian

We propose a novel loss function that dynamically rescales the cross entropy based on prediction difficulty regarding a sample. Deep neural network architectures in image classification tasks struggle to disambiguate visually similar…

Computer Vision and Pattern Recognition · Computer Science 2019-09-26 Serim Ryou , Seong-Gyun Jeong , Pietro Perona

The structure of a complex network plays a crucial role in determining its dynamical properties. In this work, we show that the the degree to which a network is directed and hierarchically organised is closely associated with the degree to…

In previous work we have introduced a network-based model that abstracts many details of the underlying landscape and compresses the landscape information into a weighted, oriented graph which we call the local optima network. The vertices…

Artificial Intelligence · Computer Science 2011-07-22 Sébastien Verel , Gabriela Ochoa , Marco Tomassini

Cross-entropy loss has long been the standard choice for training deep neural networks, yet it suffers from interpretability limitations, unbounded weight growth, and inefficiencies that can contribute to costly training dynamics. The…

Machine Learning · Computer Science 2026-04-30 Maxwell Miller-Golub , Collin Coil , Kamil Faber , Marcin Pietron , Panpan Zheng , Pasquale Minervini , Roberto Corizzo

In this paper, we focus on the unsupervised setting for structure learning of deep neural networks and propose to adopt the efficient coding principle, rooted in information theory and developed in computational neuroscience, to guide the…

Machine Learning · Computer Science 2021-05-31 Jinhui Yuan , Fei Pan , Chunting Zhou , Tao Qin , Tie-Yan Liu

Machine learned interatomic potentials, particularly equivariant message-passing (MP) models, have demonstrated high fidelity in representing first-principles data, revolutionizing computational studies in materials science, biophysics, and…

Chemical Physics · Physics 2025-09-01 Yaolong Zhang , Hua Guo

Machine learning interatomic potentials (MLIPs) have been widely used to facilitate large-scale molecular simulations with accuracy comparable to ab initio methods. In practice, MLIP-based molecular simulations often encounter the issue of…

Computational Physics · Physics 2025-04-17 Han Xu , Taoyong Cui , Chenyu Tang , Jinzhe Ma , Dongzhan Zhou , Yuqiang Li , Xiang Gao , Xingao Gong , Wanli Ouyang , Shufei Zhang , Mao Su

Deep neural networks (DNNs) have achieved tremendous success in a variety of applications across many disciplines. Yet, their superior performance comes with the expensive cost of requiring correctly annotated large-scale datasets.…

Machine Learning · Computer Science 2018-12-03 Zhilu Zhang , Mert R. Sabuncu

Recent end-to-end deep neural networks for disparity regression have achieved the state-of-the-art performance. However, many well-acknowledged specific properties of disparity estimation are omitted in these deep learning algorithms.…

Computer Vision and Pattern Recognition · Computer Science 2020-05-29 Yang Chen , Zongqing Lu , Xuechen Zhang , Lei Chen , Qingmin Liao

This paper studies generalization capabilities of neural networks (NNs) using new and improved PyTorch library Loss Landscape Analysis (LLA). LLA facilitates visualization and analysis of loss landscapes along with the properties of NN…

Machine Learning · Computer Science 2025-02-06 Nikita Gabdullin

Polyacrylonitrile (PAN) is an important commercial polymer, bearing atactic stereochemistry resulting from nonselective radical polymerization. As such, an accurate, fundamental understanding of governing interactions among PAN molecular…

Energy efficiency and memory footprint of a convolutional neural network (CNN) implemented on a CNN inference accelerator depend on many factors, including a weight quantization strategy (i.e., data types and bit-widths) and mapping (i.e.,…

Hardware Architecture · Computer Science 2025-07-23 Jan Klhufek , Miroslav Safar , Vojtech Mrazek , Zdenek Vasicek , Lukas Sekanina