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Evolution of the amino acid sequences of transthyretin (TTR) can provide additional information about its dynamics that both complements and extends the already extensive static structural data. Protein dynamics is largely driven by…

Biological Physics · Physics 2021-12-28 J. C. Phillips

The design of complex materials and the formation of specific patterns often arise from the properties of the individual building blocks. In this respect, colloidal systems offer a unique opportunity because nowadays they can be synthesized…

Soft Condensed Matter · Physics 2022-03-01 Fabrizio Camerin , Emanuela Zaccarelli

A quantum theory on conformation-electron system is presented. Protein folding is regarded as the quantum transition between torsion states on polypeptide chain, and the folding rate is calculated by nonadiabatic operator method. The theory…

Biomolecules · Quantitative Biology 2011-02-21 Liaofu Luo , Jun Lu

The emergence of biochemical activities in a protein seem to commence with the onset of atomic mean-square displacements along the protein lattice. The ensuing protein dynamical transition has been discussed extensively in the literature,…

Biological Physics · Physics 2011-09-23 Andrey Krokhotin , Antti J. Niemi

We provide molecular dynamics simulation of heat transport and thermal energy diffusion in one-dimensional molecular chains with different interparticle pair potentials at zero and non-zero temperature. We model the thermal conductivity…

Mesoscale and Nanoscale Physics · Physics 2015-09-11 Yuriy A. Kosevich , Alexander V. Savin

Dense packing of hydrophobic residues in the cores of globular proteins determines their stability. Recently, we have shown that protein cores possess packing fraction $\phi \approx 0.56$, which is the same as dense, random packing of amino…

Biomolecules · Quantitative Biology 2019-02-22 John D. Treado , Zhe Mei , Lynne Regan , Corey S. O'Hern

The design of artificial microswimmers is often inspired by the strategies of natural microorganisms. Many of these creatures exploit the fact that elasticity breaks the time-reversal symmetry of motion at low Reynolds numbers, but this…

Cooling high-power electronics in multilayer integrated circuits (ICs) is challenging for existing cooling methods. In this work, we designed through-chip microchannels (TCMCs) that cross the entire chip perpendicularly to the layers, with…

Fluid Dynamics · Physics 2023-12-20 Lihong Ao , Aymeric Ramiere

Previous studies have suggested a crossover from superdiffusive to normal heat transport in one-dimensional (1D) anharmonic oscillator systems with a double-well type interatomic interaction like $V(\xi)=-\xi^2/2+\xi^4/4$, when the system…

Statistical Mechanics · Physics 2016-04-22 Daxing Xiong

Protein structure prediction is a challenging and unsolved problem in computer science. Proteins are the sequence of amino acids connected together by single peptide bond. The combinations of the twenty primary amino acids are the…

Computational Engineering, Finance, and Science · Computer Science 2015-10-12 Mahmood A. Rashid , Firas Khatib , Abdul Sattar

A class of analog computers built from large numbers of microscopic probabilistic machines is discussed. It is postulated that such computers are implemented in biological systems as ensembles of protein molecules. The formalism is based on…

Biological Physics · Physics 2008-06-24 Victor Eliashberg

The use of beta-solenoid proteins as functionalizable, nanoscale, self-assembling molecular building blocks may have many applications, including templating the growth of wires or higher-dimensional structures. By understanding their…

Biomolecules · Quantitative Biology 2017-06-20 Amanda S. Parker , Krishnakumar M. Ravikumar , Daniel L. Cox

A low-temperature dynamical transition has been reported in several proteins. We provide the first observation of a `protein-like' dynamical transition in nonbiological aqueous environments. To this aim we exploit the popular colloidal…

In the work, a modified effective medium theory is constructed for calculating the effective properties of thermoelectric composites with different values of percolation thresholds. It is shown that even at concentrations beyond the…

Materials Science · Physics 2020-06-23 Snarskii Andrei , Yuskevich Pavel

Polar bubble domains are complex topological defects akin to magnetic skyrmions that can spontaneously form in ferroelectric thin films and superlattices. They can be deterministically written and deleted and exhibit a set of properties,…

Materials Science · Physics 2023-03-27 S. Prokhorenko , Y. Nahas , Q. Zhang , V. Govinden , N. Valanoor , L. Bellaiche

Three-dimensional interconnected nanowire networks have recently attracted notable attention for the fabrication of new devices for energy harvesting/storage, sensing, catalysis, magnetic and spintronic applications and for the design of…

Quantum technologies promise a radically new way to solve classically intractable computing problems. Superconducting circuits as a platform are at the forefront of this field. The cryogenic operation temperatures of superconducting…

We investigate the near-field heat transfer between a semi-infinite medium and a nanoparticle made of composite materials. We show that, in the effective medium approximation, the heat transfer can be greatly enhanced by considering…

Mesoscale and Nanoscale Physics · Physics 2015-05-12 W. J. M. Kort-Kamp , P. I. Caneda , F. S. S. Rosa , F. A. Pinheiro

Active gels are a class of biologically-relevant material containing embedded agents that spontaneously generate forces acting on a sparse filament network. In vitro experiments of protein filaments and molecular motors have revealed a…

Soft Condensed Matter · Physics 2024-06-03 David A. Head , Gerhard Gompper , W. J. Briels

Studying physical mechanisms and common geometric principles underlying known spherical packings is crucial for rational design of synthetic nanocontainers. Here we model the growth of small spherical shells containing n<72 identical…

Soft Condensed Matter · Physics 2026-03-16 Ivan Yu. Golushko , Olga V. Konevtsova , Daria S. Roshal , Sergei B. Rochal