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Bayesian parameter inference for complex stochastic simulators is challenging due to intractable likelihood functions. Existing simulation-based inference methods often require large number of simulations and become costly to use in…

Machine Learning · Computer Science 2026-04-06 Vasilis Gkolemis , Christos Diou , Michael U. Gutmann

JAX-in-Cell is a fully electromagnetic, multispecies, and relativistic 1D3V Particle-in-Cell (PIC) framework implemented entirely in JAX. It provides a modern, Python-based alternative to traditional PIC frameworks. It leverages…

Plasma Physics · Physics 2025-12-16 Longyu Ma , Rogerio Jorge , Hongke Lu , Aaron Tran , Christopher Woolford

Driven by human ingenuity and creativity, the discovery of super-resolution techniques, which circumvent the classical diffraction limit of light, represent a leap in optical microscopy. However, the vast space encompassing all possible…

Optics · Physics 2024-12-17 Carla Rodríguez , Sören Arlt , Leonhard Möckl , Mario Krenn

We present RUBIX, a fully tested, well-documented, and modular Open Source tool developed in JAX, designed to forward model IFU cubes of galaxies from cosmological hydrodynamical simulations. The code automatically parallelizes computations…

Instrumentation and Methods for Astrophysics · Physics 2024-12-12 Ufuk Çakır , Anna Lena Schaible , Tobias Buck

Context. Inferring spectral parameters from X-ray data is one of the cornerstones of high-energy astrophysics, and is achieved using software stacks that have been developed over the last twenty years and more. However, as models get more…

Instrumentation and Methods for Astrophysics · Physics 2024-10-23 Simon Dupourqué , Didier Barret , Camille M. Diez , Sébastien Guillot , Erwan Quintin

The rapid rise of scientific machine learning (SciML) has expanded the role of differentiable modeling, surrogate modeling, and data-driven constitutive laws in large-scale simulation. The JAX framework provides an attractive environment…

Mathematical Software · Computer Science 2026-04-27 Alberto Cattaneo , M Keith Ballard , Robert M. Kirby , Varun Shankar

We introduce microJAX, the first fully differentiable implementation of the image-centered ray-shooting (ICRS) algorithm for gravitational microlensing. Built on JAX and its XLA just-in-time compiler, microJAX exploits GPU parallelism while…

Earth and Planetary Astrophysics · Physics 2025-10-06 Shota Miyazaki , Hajime Kawahara

We present $\texttt{PyBird-JAX}$, a differentiable, $\texttt{JAX}$-based implementation of $\texttt{PyBird}$, using internal neural network emulators to accelerate computationally costly operations for rapid large-scale structure (LSS)…

Cosmology and Nongalactic Astrophysics · Physics 2026-03-09 Alexander Reeves , Pierre Zhang , Henry Zheng

Semi-analytic models (SAMs) have been treating galaxy populations as dynamical systems for $\gtrsim50$ years, but their evolution equations remain poorly constrained. We introduce sapphire, a modular, automatically differentiable,…

In our effort to facilitate machine learning-assisted computational fluid dynamics (CFD), we introduce the second iteration of JAX-Fluids. JAX-Fluids is a Python-based fully-differentiable CFD solver designed for compressible single- and…

Fluid Dynamics · Physics 2024-02-09 Deniz A. Bezgin , Aaron B. Buhendwa , Nikolaus A. Adams

We present ForwardDiff, a Julia package for forward-mode automatic differentiation (AD) featuring performance competitive with low-level languages like C++. Unlike recently developed AD tools in other popular high-level languages such as…

Mathematical Software · Computer Science 2016-07-28 Jarrett Revels , Miles Lubin , Theodore Papamarkou

The Jacobi prior offers an alternative Bayesian framework, designed to achieve superior computational efficiency without compromising predictive performance. Compared to widely used methods such as Lasso, Ridge, Elastic Net, uniLasso, the…

Methodology · Statistics 2026-03-03 Sourish Das , Shouvik Sardar

We present jFoF, a fully GPU-native Friends-of-Friends (FoF) halo finder designed for both high-performance simulation analysis and differentiable modeling. Implemented in JAX, jFoF achieves end-to-end acceleration by performing all…

Instrumentation and Methods for Astrophysics · Physics 2025-12-09 Benjamin Horowitz , Adrian E. Bayer

We introduce jaxFMM, an open-source, adaptive, highly parallel point-charge Fast Multipole Method implementation for the Laplace kernel written in JAX. It is based on a non-uniform refinement strategy, which results in extremely concise and…

Computational Physics · Physics 2025-11-20 Robert Kraft , Florian Bruckner , Dieter Suess , Claas Abert

Cellular automata have become a cornerstone for investigating emergence and self-organization across diverse scientific disciplines. However, the absence of a hardware-accelerated cellular automata library limits the exploration of new…

Machine Learning · Computer Science 2025-03-12 Maxence Faldor , Antoine Cully

We demonstrate a GPU-accelerated nested sampling framework for efficient high-dimensional Bayesian inference in cosmology. Using JAX-based neural emulators and likelihoods for cosmic microwave background and cosmic shear analyses, our…

Cosmology and Nongalactic Astrophysics · Physics 2025-10-08 Toby Lovick , David Yallup , Davide Piras , Alessio Spurio Mancini , Will Handley

We extend JAX with the capability to automatically differentiate higher-order functions (functionals and operators). By representing functions as a generalization of arrays, we seamlessly use JAX's existing primitive system to implement…

Programming Languages · Computer Science 2024-01-30 Min Lin

BlackJAX is a library implementing sampling and variational inference algorithms commonly used in Bayesian computation. It is designed for ease of use, speed, and modularity by taking a functional approach to the algorithms' implementation.…

Field-level inference has emerged as a promising framework to fully harness the cosmological information encoded in next-generation galaxy surveys. It involves performing Bayesian inference to jointly estimate the cosmological parameters…

Cosmology and Nongalactic Astrophysics · Physics 2025-12-19 Hugo Simon , François Lanusse , Arnaud de Mattia