English
Related papers

Related papers: A Biomedical Knowledge Graph for Biomarker Discove…

200 papers

Biomedical ontologies, which comprehensively define concepts and relations for biomedical entities, are crucial for structuring and formalizing domain-specific information representations. Biomedical code mapping identifies similarity or…

Information Retrieval · Computer Science 2025-02-27 Hui Feng , Yuntzu Yin , Emiliano Reynares , Jay Nanavati

In the last years, deep learning has shown to be a game-changing technology in artificial intelligence thanks to the numerous successes it reached in diverse application fields. Among others, the use of deep learning for the recommendation…

Information Retrieval · Computer Science 2018-07-16 Vito Bellini , Angelo Schiavone , Tommaso Di Noia , Azzurra Ragone , Eugenio Di Sciascio

Knowledge graphs (KG) are used in a wide range of applications. The automation of KG generation is very desired due to the data volume and variety in industries. One important approach of KG generation is to map the raw data to a given KG…

Artificial Intelligence · Computer Science 2022-09-23 Dongzhuoran Zhou , Baifan Zhou , Jieying Chen , Gong Cheng , Egor V. Kostylev , Evgeny Kharlamov

Graph data structures are widely used to store relational information between several entities. With data being generated worldwide on a large scale, we see a significant growth in the generation of knowledge graphs. Thing in the future is…

Artificial Intelligence · Computer Science 2023-10-24 Rohith Teja Mittakola , Thomas Hassan

We introduce an approach for open-domain question answering (QA) that retrieves and reads a passage graph, where vertices are passages of text and edges represent relationships that are derived from an external knowledge base or…

Computation and Language · Computer Science 2020-04-14 Sewon Min , Danqi Chen , Luke Zettlemoyer , Hannaneh Hajishirzi

Industrial analytics that includes among others equipment diagnosis and anomaly detection heavily relies on integration of heterogeneous production data. Knowledge Graphs (KGs) as the data format and ontologies as the unified data schemata…

Most Knowledge Graphs (KGs) contain textual descriptions of entities in various natural languages. These descriptions of entities provide valuable information that may not be explicitly represented in the structured part of the KG. Based on…

Computation and Language · Computer Science 2020-04-23 Genet Asefa Gesese , Mehwish Alam , Harald Sack

In this paper we propose a novel approach based on knowledge graphs to provide timely access to structured information, to enable actionable technology intelligence, and improve cyber-physical systems planning. Our framework encompasses a…

Artificial Intelligence · Computer Science 2024-10-01 Frank Wawrzik , Matthias Plaue , Savan Vekariya , Christoph Grimm

Knowledge graphs (KGs) model facts about the world, they consist of nodes (entities such as companies and people) that are connected by edges (relations such as founderOf). Facts encoded in KGs are frequently used by search applications to…

A visual-relational knowledge graph (KG) is a multi-relational graph whose entities are associated with images. We explore novel machine learning approaches for answering visual-relational queries in web-extracted knowledge graphs. To this…

In real world applications, knowledge graphs (KG) are widely used in various domains (e.g. medical applications and dialogue agents). However, for fact verification, KGs have not been adequately utilized as a knowledge source. KGs can be a…

Computation and Language · Computer Science 2023-10-18 Jiho Kim , Sungjin Park , Yeonsu Kwon , Yohan Jo , James Thorne , Edward Choi

Conventionally, the radiologist prepares the diagnosis notes and shares them with the transcriptionist. Then the transcriptionist prepares a preliminary formatted report referring to the notes, and finally, the radiologist reviews the…

Computation and Language · Computer Science 2022-06-15 Kaveri Kale , Pushpak Bhattacharyya , Aditya Shetty , Milind Gune , Kush Shrivastava , Rustom Lawyer , Spriha Biswas

Knowledge Graphs (KG) and associated Knowledge Graph Embedding (KGE) models have recently begun to be explored in the context of drug discovery and have the potential to assist in key challenges such as target identification. In the drug…

Biomolecules · Quantitative Biology 2022-06-01 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Charles Tapley Hoyt , William L Hamilton

Biomedical Knowledge Graphs (BKGs) integrate diverse datasets to elucidate complex relationships within the biomedical field. Effective link prediction on these graphs can uncover valuable connections, such as potential novel drug-disease…

Computation and Language · Computer Science 2025-07-01 Tien Dang , Viet Thanh Duy Nguyen , Minh Tuan Le , Truong-Son Hy

Knowledge acquisition is the essential first step of any Knowledge Graph (KG) application. This knowledge can be extracted from a given corpus (KG generation process) or specified from an existing KG (KG specification process). Focusing on…

Computation and Language · Computer Science 2020-12-21 Dimitrios Christofidellis , Matteo Manica , Leonidas Georgopoulos , Hans Vandierendonck

We explore different strategies to integrate prior domain knowledge into the design of a deep neural network (DNN). We focus on graph neural networks (GNN), with a use case of estimating the potential energy of chemical systems (molecules…

Machine Learning · Computer Science 2022-08-26 Jay Morgan , Adeline Paiement , Christian Klinke

Question answering (QA) systems are increasingly deployed across domains. However, their reliability is undermined when retrieved evidence is incomplete, noisy, or uncertain. Existing knowledge graph (KG) based QA frameworks typically…

Computation and Language · Computer Science 2026-01-16 Yu Takahashi , Shun Takeuchi , Kexuan Xin , Guillaume Pelat , Yoshiaki Ikai , Junya Saito , Jonathan Vitale , Shlomo Berkovsky , Amin Beheshti

The incorporation of data analytics in the healthcare industry has made significant progress, driven by the demand for efficient and effective big data analytics solutions. Knowledge graphs (KGs) have proven utility in this arena and are…

Artificial Intelligence · Computer Science 2022-07-11 Bilal Abu-Salih , Muhammad AL-Qurishi , Mohammed Alweshah , Mohammad AL-Smadi , Reem Alfayez , Heba Saadeh

Knowledge graphs (KGs) are widely used for representing and organizing structured knowledge in diverse domains. However, the creation and upkeep of KGs pose substantial challenges. Developing a KG demands extensive expertise in data…

Information Retrieval · Computer Science 2023-09-19 Samira Babalou , Sheeba Samuel , Birgitta König-Ries

Discovery gene-disease links is important in biology and medicine areas, enabling disease identification and drug repurposing. Machine learning approaches accelerate this process by leveraging biological knowledge represented in ontologies…

Machine Learning · Computer Science 2025-04-14 Catarina Canastra , Cátia Pesquita