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In a network cliques are fully connected subgraphs that reveal which are the tight communities present in it. Cliques of size c>3 are present in random Erdos and Renyi graphs only in the limit of diverging average connectivity. Starting…

Disordered Systems and Neural Networks · Physics 2009-11-11 Ginestra Bianconi , Matteo Marsili

Random geometric graphs (RGGs) are commonly used to model networked systems that depend on the underlying spatial embedding. We concern ourselves with the probability distribution of an RGG, which is crucial for studying its random…

Information Theory · Computer Science 2018-01-16 Mihai-Alin Badiu , Justin P. Coon

Geometric constraints impact the formation of a broad range of spatial networks, from amino acid chains folding to proteins structures to rearranging particle aggregates. How the network of interactions dynamically self-organizes in such…

Molecular Networks · Quantitative Biology 2016-10-19 Nora Molkenthin , Marc Timme

Graph Convolutional Networks (GCNs) are one of the most popular architectures that are used to solve classification problems accompanied by graphical information. We present a rigorous theoretical understanding of the effects of graph…

Machine Learning · Computer Science 2022-08-03 Aseem Baranwal , Kimon Fountoulakis , Aukosh Jagannath

Real networks often grow through the sequential addition of new nodes that connect to older ones in the graph. However, many real systems evolve through the branching of fundamental units, whether those be scientific fields, countries, or…

Physics and Society · Physics 2020-06-30 Muhua Zheng , Guillermo García-Pérez , Marián Boguñá , M. Ángeles Serrano

In this paper, we propose a multilayer inhomogeneous random graph model (MIRG), whose layers may consist of both single-edge and multi-edge graphs. In the single layer case, it has been shown that the regular variation of the weight…

Probability · Mathematics 2024-03-05 Daniel Cirkovic , Tiandong Wang , Daren B. H. Cline

Real-world networks exhibit universal structural properties such as sparsity, small-worldness, heterogeneous degree distributions, high clustering, and community structures. Geometric network models, particularly Random Hyperbolic Graphs…

Social and Information Networks · Computer Science 2025-06-04 Stefano Guarino , Davide Torre , Enrico Mastrostefano

Graph embeddings have emerged as a powerful tool for representing complex network structures in a low-dimensional space, enabling the use of efficient methods that employ the metric structure in the embedding space as a proxy for the…

Social and Information Networks · Computer Science 2024-04-18 Radosław Nowak , Adam Małkowski , Daniel Cieślak , Piotr Sokół , Paweł Wawrzyński

Clustering $\unicode{x2013}$ the tendency for neighbors of nodes to be connected $\unicode{x2013}$ quantifies the coupling of a complex network to its latent metric space. In random geometric graphs, clustering undergoes a continuous phase…

Physics and Society · Physics 2022-11-22 Jasper van der Kolk , M. Ángeles Serrano , Marián Boguñá

Many machine learning algorithms used for dimensional reduction and manifold learning leverage on the computation of the nearest neighbours to each point of a dataset to perform their tasks. These proximity relations define a so-called…

Statistical Mechanics · Physics 2020-07-22 Vittorio Erba , Sebastiano Ariosto , Marco Gherardi , Pietro Rotondo

We investigate the problem of multiplex graph embedding, that is, graphs in which nodes interact through multiple types of relations (dimensions). In recent years, several methods have been developed to address this problem. However, the…

Machine Learning · Computer Science 2023-12-29 Kamel Abdous , Nairouz Mrabah , Mohamed Bouguessa

Clique-width is a well-studied graph parameter owing to its use in understanding algorithmic tractability: if the clique-width of a graph class ${\cal G}$ is bounded by a constant, a wide range of problems that are NP-complete in general…

Combinatorics · Mathematics 2021-12-23 Konrad K. Dabrowski , Matthew Johnson , Daniël Paulusma

Scale-free networks contain many small cliques and cycles. We model such networks as inhomogeneous random graphs with regularly varying infinite-variance weights. For these models, the number of cliques and cycles have exact integral…

Probability · Mathematics 2019-03-27 A. J. E. M. Janssen , Johan S. H. van Leeuwaarden , Seva Shneer

Heterogeneous graphs (HGs) also known as heterogeneous information networks have become ubiquitous in real-world scenarios; therefore, HG embedding, which aims to learn representations in a lower-dimension space while preserving the…

Social and Information Networks · Computer Science 2020-12-02 Xiao Wang , Deyu Bo , Chuan Shi , Shaohua Fan , Yanfang Ye , Philip S. Yu

For a given graph $H$, its subdivisions carry the same topological structure. The existence of $H$-subdivisions within a graph $G$ has deep connections with topological, structural and extremal properties of $G$. One prominent example of…

Combinatorics · Mathematics 2023-08-22 Seonghyuk Im , Jaehoon Kim , Younjin Kim , Hong Liu

The assortative behavior of a network is the tendency of similar (or dissimilar) nodes to connect to each other. This tendency can have an influence on various properties of the network, such as its robustness or the dynamics of spreading…

Social and Information Networks · Computer Science 2025-08-07 Marc Kaufmann , Ulysse Schaller , Thomas Bläsius , Johannes Lengler

Large real-life complex networks are often modeled by various random graph constructions and hundreds of further references therein. In many cases it is not at all clear how the modeling strength of differently generated random graph model…

Data Structures and Algorithms · Computer Science 2020-09-01 András Faragó , Rupei Xu

Discovering the underlying structures present in large real world graphs is a fundamental scientific problem. In this paper we show that a graph's clique tree can be used to extract a hyperedge replacement grammar. If we store an ordering…

Social and Information Networks · Computer Science 2016-08-11 Salvador Aguiñaga , Rodrigo Palacios , David Chiang , Tim Weninger

Statisticians and quantitative neuroscientists have actively promoted the use of independence relationships for investigating brain networks, genomic networks, and other measurement technologies. Estimation of these graphs depends on two…

Methodology · Statistics 2014-10-15 Fang Han , Huitong Qiu , Han Liu , Brian Caffo

Transport in crowded, complex environments occurs across many spatial scales. Geometric restrictions can hinder the motion of individuals and, combined with crowding between individuals, can have drastic effects on global transport…

Physics and Society · Physics 2021-08-11 Daniel B. Wilson , Francis G. Woodhouse , Matthew J. Simpson , Ruth E. Baker