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Biomedical networks (or graphs) are universal descriptors for systems of interacting elements, from molecular interactions and disease co-morbidity to healthcare systems and scientific knowledge. Advances in artificial intelligence,…

Machine Learning · Computer Science 2025-02-07 Michelle M. Li , Kexin Huang , Marinka Zitnik

Embedding entities and relations into a continuous multi-dimensional vector space have become the dominant method for knowledge graph embedding in representation learning. However, most existing models ignore to represent hierarchical…

Artificial Intelligence · Computer Science 2019-09-12 Cunxiang Wang , Feiliang Ren , Zhichao Lin , Chenxv Zhao , Tian Xie , Yue Zhang

Graph embedding algorithms are used to efficiently represent (encode) a graph in a low-dimensional continuous vector space that preserves the most important properties of the graph. One aspect that is often overlooked is whether the graph…

Machine Learning · Computer Science 2020-01-31 Zekarias T. Kefato , Nasrullah Sheikh , Alberto Montresor

This work provides the first unifying theoretical framework for node (positional) embeddings and structural graph representations, bridging methods like matrix factorization and graph neural networks. Using invariant theory, we show that…

Machine Learning · Computer Science 2020-09-23 Balasubramaniam Srinivasan , Bruno Ribeiro

Deep Neural Networks have shown tremendous success in the area of object recognition, image classification and natural language processing. However, designing optimal Neural Network architectures that can learn and output arbitrary graphs…

Machine Learning · Computer Science 2019-07-02 Mital Kinderkhedia

Recent advances in machine learning, particularly Large Language Models (LLMs) such as BERT and GPT, provide rich contextual embeddings that improve text representation. However, current document clustering approaches often ignore the…

Computation and Language · Computer Science 2024-12-20 Imed Keraghel , Mohamed Nadif

Network embedding assigns nodes in a network to low-dimensional representations and effectively preserves the network structure. Recently, a significant amount of progresses have been made toward this emerging network analysis paradigm. In…

Social and Information Networks · Computer Science 2017-11-27 Peng Cui , Xiao Wang , Jian Pei , Wenwu Zhu

Entity alignment is a viable means for integrating heterogeneous knowledge among different knowledge graphs (KGs). Recent developments in the field often take an embedding-based approach to model the structural information of KGs so that…

Computation and Language · Computer Science 2019-09-23 Yuting Wu , Xiao Liu , Yansong Feng , Zheng Wang , Dongyan Zhao

Introduction: Tracing the spread of ideas and the presence of influence is a question of special importance across a wide range of disciplines, ranging from intellectual history to cultural analytics, computational social science, and the…

Computation and Language · Computer Science 2024-11-01 Lucian Li , Eryclis Silva

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

Social and Information Networks · Computer Science 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Graph Convolutional Networks (GCN) have been effective at tasks that have rich relational structure and can preserve global structure information of a dataset in graph embeddings. Recently, many researchers focused on examining whether GCNs…

Computation and Language · Computer Science 2022-03-31 Soyeon Caren Han , Zihan Yuan , Kunze Wang , Siqu Long , Josiah Poon

Graph neural networks (GNNs) are deep learning models designed specifically for graph data, and they typically rely on node features as the input to the first layer. When applying such a type of network on the graph without node features,…

Graph matching refers to finding node correspondence between graphs, such that the corresponding node and edge's affinity can be maximized. In addition with its NP-completeness nature, another important challenge is effective modeling of…

Computer Vision and Pattern Recognition · Computer Science 2020-12-01 Runzhong Wang , Junchi Yan , Xiaokang Yang

Graph embedding is a transformation of nodes of a network into a set of vectors. A good embedding should capture the underlying graph topology and structure, node-to-node relationship, and other relevant information about the graph, its…

Social and Information Networks · Computer Science 2021-12-02 Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Expert search aims to find and rank experts based on a user's query. In academia, retrieving experts is an efficient way to navigate through a large amount of academic knowledge. Here, we study how different distributed representations of…

Information Retrieval · Computer Science 2022-11-10 Mark Berger , Jakub Zavrel , Paul Groth

Real-world information networks are increasingly occurring across various disciplines including online social networks and citation networks. These network data are generally characterized by sparseness, nonlinearity and heterogeneity…

Machine Learning · Computer Science 2021-09-17 Amina Amara , Mohamed Ali Hadj Taieb , Mohamed Ben Aouicha

Graph neural networks (GNNs) have gained prominence in recommendation systems in recent years. By representing the user-item matrix as a bipartite and undirected graph, GNNs have demonstrated their potential to capture short- and…

Information Retrieval · Computer Science 2023-11-29 Daniele Malitesta , Claudio Pomo , Tommaso Di Noia

We introduce a novel embedding method diverging from conventional approaches by operating within function spaces of finite dimension rather than finite vector space, thus departing significantly from standard knowledge graph embedding…

Machine Learning · Statistics 2024-09-25 Louis Mozart Kamdem Teyou , Caglar Demir , Axel-Cyrille Ngonga Ngomo

Knowledge graph embeddings are now a widely adopted approach to knowledge representation in which entities and relationships are embedded in vector spaces. In this chapter, we introduce the reader to the concept of knowledge graph…

Artificial Intelligence · Computer Science 2020-05-01 Federico Bianchi , Gaetano Rossiello , Luca Costabello , Matteo Palmonari , Pasquale Minervini

Over the past years, embedding learning on networks has shown tremendous results in link prediction tasks for complex systems, with a wide range of real-life applications. Learning a representation for each node in a knowledge graph allows…

Machine Learning · Computer Science 2026-02-03 Orell Trautmann , Olaf Wolkenhauer , Clémence Réda