Related papers: Bioformer: an efficient transformer language model…

We create a reusable Transformer, BrainBERT, for intracranial recordings bringing modern representation learning approaches to neuroscience. Much like in NLP and speech recognition, this Transformer enables classifying complex concepts,…

Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing…

The rising rate of drug-related deaths in the United States, largely driven by fentanyl, requires timely and accurate surveillance. However, critical overdose data are often buried in free-text coroner reports, leading to delays and…

Lately, pre-trained language models advanced the field of natural language processing (NLP). The introduction of Bidirectional Encoders for Transformers (BERT) and its optimized version RoBERTa have had significant impact and increased the…

Objective: To comparatively evaluate several transformer model architectures at identifying protected health information (PHI) in the i2b2/UTHealth 2014 clinical text de-identification challenge corpus. Methods: The i2b2/UTHealth 2014…

Processing information locked within clinical health records is a challenging task that remains an active area of research in biomedical NLP. In this work, we evaluate a broad set of machine learning techniques ranging from simple RNNs to…

Pre-trained Transformers currently dominate most NLP tasks. They impose, however, limits on the maximum input length (512 sub-words in BERT), which are too restrictive in the legal domain. Even sparse-attention models, such as Longformer…

The Transformer architecture revolutionized the field of natural language processing (NLP). Transformers-based models (e.g., BERT) power many important Web services, such as search, translation, question-answering, etc. While enormous…

Transformer-based language models, more specifically BERT-based architectures have achieved state-of-the-art performance in many downstream tasks. However, for a relatively low-resource language such as Thai, the choices of models are…

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

Recent advancements in the NLP field showed that transfer learning helps with achieving state-of-the-art results for new tasks by tuning pre-trained models instead of starting from scratch. Transformers have made a significant improvement…

This paper presents a performance study of transformer language models under different hardware configurations and accuracy requirements and derives empirical observations about these resource/accuracy trade-offs. In particular, we study…

Recently, the bidirectional encoder representations from transformers (BERT) model has attracted much attention in the field of natural language processing, owing to its high performance in language understanding-related tasks. The BERT…

Transformer-based models have gained increasing popularity achieving state-of-the-art performance in many research fields including speech translation. However, Transformer's quadratic complexity with respect to the input sequence length…

Synthesizing medical images, such as PET, is a challenging task due to the fact that the intensity range is much wider and denser than those in photographs and digital renderings and are often heavily biased toward zero. Above all,…

Large-scale language model pretraining is a very successful form of self-supervised learning in natural language processing, but it is increasingly expensive to perform as the models and pretraining corpora have become larger over time. We…

Motivation: Named Entity Recognition (NER) is a key task to support biomedical research. In Biomedical Named Entity Recognition (BioNER), obtaining high-quality expert annotated data is laborious and expensive, leading to the development of…

Transfer learning in natural language processing (NLP), as realized using models like BERT (Bi-directional Encoder Representation from Transformer), has significantly improved language representation with models that can tackle challenging…

Recently, pre-trained models have been the dominant paradigm in natural language processing. They achieved remarkable state-of-the-art performance across a wide range of related tasks, such as textual entailment, natural language inference,…

Background and Objective: Biomedical Named Entity Recognition (BioNER) is a foundational task in medical informatics, crucial for downstream applications like drug discovery and clinical trial matching. However, adapting general-domain…