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GPU technology has been improving at an expedited pace in terms of size and performance, empowering HPC and AI/ML researchers to advance the scientific discovery process. However, this also leads to inefficient resource usage, as most GPU…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-10 Baolin Li , Tirthak Patel , Siddarth Samsi , Vijay Gadepally , Devesh Tiwari

Large-language models (LLMs) are rapidly being applied to radiology, enabling automated image interpretation and report generation tasks. Their deployment in clinical practice requires both high diagnostic accuracy and low inference…

Tissues and Organs · Quantitative Biology 2025-11-11 Jyun-Ping Kao

Graphics Processing Units (GPUs) have traditionally relied on the host CPU to initiate access to the data storage. This approach is well-suited for GPU applications with known data access patterns that enable partitioning of their dataset…

In the paper, a parallel Tabu Search algorithm for the Resource Constrained Project Scheduling Problem is proposed. To deal with this NP-hard combinatorial problem many optimizations have been performed. For example, a resource evaluation…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-15 Libor Bukata , Premysl Sucha , Zdenek Hanzalek

Efficient multi-core parallel processing of recursive join queries is critical for achieving good performance in graph database management systems (GDBMSs). Prior work adopts two broad approaches. First is the state of the art morsel-driven…

Databases · Computer Science 2025-08-28 Anurag Chakraborty , Semih Salihoğlu

Graph databases have grown in popularity in recent years as they are able to efficiently store and query complex relationships between data. Incidentally, navigation data and road networks can be processed, sampled or modified efficiently…

Databases · Computer Science 2023-06-13 Karin Festl , Patrick Promitzer , Daniel Watzenig , Huilin Yin

Graphics Processing Units (GPUs) are becoming popular accelerators in modern High-Performance Computing (HPC) clusters. Installing GPUs on each node of the cluster is not efficient resulting in high costs and power consumption as well as…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-06-15 Javier Prades , Blesson Varghese , Carlos Reano , Federico Silla

Modern GPU systems are constantly evolving to meet the needs of computing-intensive applications in scientific and machine learning domains. However, there is typically a gap between the hardware capacity and the achievable application…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-02 Gabin Schieffer , Ruimin Shi , Stefano Markidis , Andreas Herten , Jennifer Faj , Ivy Peng

GPUs have become indispensable in high-performance computing, machine learning, and many other domains. Efficiently utilizing the memory subsystem on GPUs is critical for maximizing computing power through massive parallelism. Analyzing…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-28 Yanbo Zhao , Jinku Cui , Zecheng Li , Shuyin Jiao , Xu Liu , Jiajia Li

General Purpose Graphics Processing Unit (GPGPU) computing plays a transformative role in deep learning and machine learning by leveraging the computational advantages of parallel processing. Through the power of Compute Unified Device…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-20 Ming Li , Ziqian Bi , Tianyang Wang , Yizhu Wen , Qian Niu , Xinyuan Song , Zekun Jiang , Junyu Liu , Benji Peng , Sen Zhang , Xuanhe Pan , Jiawei Xu , Jinlang Wang , Keyu Chen , Caitlyn Heqi Yin , Pohsun Feng , Ming Liu

Algorithms for finding minimum or bounded vertex covers in graphs use a branch-and-reduce strategy, which involves exploring a highly imbalanced search tree. Prior GPU solutions assign different thread blocks to different sub-trees, while…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-29 Hussein Amro , Basel Fakhri , Amer E. Mouawad , Izzat El Hajj

As recurrent neural networks become larger and deeper, training times for single networks are rising into weeks or even months. As such there is a significant incentive to improve the performance and scalability of these networks. While…

Machine Learning · Computer Science 2016-04-08 Jeremy Appleyard , Tomas Kocisky , Phil Blunsom

Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for understanding genome diversity. Yet, handling large graphs can be…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-29 Jiajie Li , Jan-Niklas Schmelzle , Yixiao Du , Simon Heumos , Andrea Guarracino , Giulia Guidi , Pjotr Prins , Erik Garrison , Zhiru Zhang

Recent advancements in Large Language Models (LLMs) have led to increasingly diverse requests, accompanied with varying resource (compute and memory) demands to serve them. However, this in turn degrades the cost-efficiency of LLM serving…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-06 Youhe Jiang , Fangcheng Fu , Xiaozhe Yao , Guoliang He , Xupeng Miao , Ana Klimovic , Bin Cui , Binhang Yuan , Eiko Yoneki

The complex regulatory dynamics of a biological network can be succinctly captured using discrete logic models. Given even sparse time-course data from the system of interest, previous work has shown that global optimization schemes are…

Molecular Networks · Quantitative Biology 2026-04-22 Joyce Reimer , Pranta Saha , Chris Chen , Neeraj Dhar , Brook Byrns , Steven Rayan , Gordon Broderick

Although the performance of commodity computers has improved drastically with the introduction of multicore processors and GPU computing, the standard R distribution is still based on single-threaded model of computation, using only a small…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-21 Bogdan Oancea , Richard Pospisil

Modern applications demand high performance and cost efficient database management systems (DBMSs). Their workloads may be diverse, ranging from online transaction processing to analytics and decision support. The cloud infrastructure…

For large-scale graph analytics on the GPU, the irregularity of data access and control flow, and the complexity of programming GPUs have been two significant challenges for developing a programmable high-performance graph library.…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-02-24 Yangzihao Wang , Andrew Davidson , Yuechao Pan , Yuduo Wu , Andy Riffel , John D. Owens

Graphics Processing Units (GPUs) have become the standard in accelerating scientific applications on heterogeneous systems. However, as GPUs are getting faster, one potential performance bottleneck with GPU-accelerated applications is the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-01 Jonah Ekelund , Stefano Markidis , Ivy Peng

GPUs are the most popular platform for accelerating HPC workloads, such as artificial intelligence and science simulations. However, most microarchitectural research in academia relies on GPU core pipeline designs based on architectures…

Hardware Architecture · Computer Science 2025-10-30 Rodrigo Huerta , Mojtaba Abaie Shoushtary , José-Lorenzo Cruz , Antonio González
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