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We introduce a linguistically enhanced combination of pre-training methods for transformers. The pre-training objectives include POS-tagging, synset prediction based on semantic knowledge graphs, and parent prediction based on dependency…

Computation and Language · Computer Science 2023-01-02 Maren Pielka , Svetlana Schmidt , Lisa Pucknat , Rafet Sifa

Machine learning has been gaining traction in recent years to meet the demand for tools that can efficiently analyze and make sense of the ever-growing databases of biomedical data in health care systems around the world. However,…

Neural and Evolutionary Computing · Computer Science 2017-02-08 Andrew Sohn , Randal S. Olson , Jason H. Moore

Lexicase selection achieves very good solution quality by introducing ordered test cases. However, the computational complexity of lexicase selection can prohibit its use in many applications. In this paper, we introduce Batch Tournament…

Neural and Evolutionary Computing · Computer Science 2019-04-19 Vinicius V. Melo , Danilo Vasconcellos Vargas , Wolfgang Banzhaf

Tree-based models have proven to be an effective solution for web ranking as well as other problems in diverse domains. This paper focuses on optimizing the runtime performance of applying such models to make predictions, given an…

Databases · Computer Science 2013-04-29 Nima Asadi , Jimmy Lin , Arjen P. de Vries

Determining the interaction partners among protein/domain families poses hard computational problems, in particular in the presence of paralogous proteins. Available approaches aim to identify interaction partners among protein/domain…

Populations and Evolution · Quantitative Biology 2015-01-14 Iman Hajirasouliha , Alexander Schönhuth , David Juan , Alfonso Valencia , S. Cenk Sahinalp

Prediction suffix trees (PST) provide an effective tool for sequence modelling and prediction. Current prediction techniques for PSTs rely on exact matching between the suffix of the current sequence and the previously observed sequence. We…

Machine Learning · Computer Science 2018-08-08 Dongwoo Kim , Christian Walder

Recent advancements in large language models (LLMs) have highlighted their potential across a variety of tasks, but their performance still heavily relies on the design of effective prompts. Existing methods for automatic prompt…

Computation and Language · Computer Science 2025-06-23 Chenyi Zhou , Zhengyan Shi , Yuan Yao , Lei Liang , Huajun Chen , Qiang Zhang

In many situations, the choice of an adequate similarity measure or metric on the feature space dramatically determines the performance of machine learning methods. Building automatically such measures is the specific purpose of…

Machine Learning · Statistics 2020-02-24 Stéphan Clémençon , Robin Vogel

Recent successes in machine learning have led to a shift in the design of autonomous systems, improving performance on existing tasks and rendering new applications possible. Data-focused approaches gain relevance across diverse, intricate…

Machine Learning · Computer Science 2019-04-17 Markus Wulfmeier

We present paired learning and inference algorithms for significantly reducing computation and increasing speed of the vector dot products in the classifiers that are at the heart of many NLP components. This is accomplished by partitioning…

Computation and Language · Computer Science 2015-05-25 Emma Strubell , Luke Vilnis , Kate Silverstein , Andrew McCallum

Gradient boosted decision trees are a popular machine learning technique, in part because of their ability to give good accuracy with small models. We describe two extensions to the standard tree boosting algorithm designed to increase this…

Machine Learning · Statistics 2017-11-01 Natalia Ponomareva , Thomas Colthurst , Gilbert Hendry , Salem Haykal , Soroush Radpour

An essential task of Automated Machine Learning (AutoML) is the problem of automatically finding the pipeline with the best generalization performance on a given dataset. This problem has been addressed with sophisticated black-box…

Machine Learning · Computer Science 2021-11-30 Felix Mohr , Marcel Wever

Retrieving relevant targets from an extremely large target set under computational limits is a common challenge for information retrieval and recommendation systems. Tree models, which formulate targets as leaves of a tree with trainable…

Machine Learning · Statistics 2020-06-30 Jingwei Zhuo , Ziru Xu , Wei Dai , Han Zhu , Han Li , Jian Xu , Kun Gai

Purpose: This study aimed to enhance protein sequence classification using natural language processing (NLP) techniques while addressing the impact of sequence similarity on model performance. We compared various machine learning and deep…

Quantitative Methods · Quantitative Biology 2025-05-26 Huma Perveen , Julie Weeds

Model trees provide an appealing way to perform interpretable machine learning for both classification and regression problems. In contrast to ``classic'' decision trees with constant values in their leaves, model trees can use linear…

Machine Learning · Computer Science 2026-03-11 Sabino Francesco Roselli , Eibe Frank

We propose an algorithm and a new method to tackle the classification problems. We propose a multi-output neural tree (MONT) algorithm, which is an evolutionary learning algorithm trained by the non-dominated sorting genetic algorithm…

Neural and Evolutionary Computing · Computer Science 2022-02-21 Varun Ojha , Giuseppe Nicosia

Most real-world classification problems deal with imbalanced datasets, posing a challenge for Artificial Intelligence (AI), i.e., machine learning algorithms, because the minority class, which is of extreme interest, often proves difficult…

Machine Learning · Computer Science 2025-04-28 Gissel Velarde , Michael Weichert , Anuj Deshmunkh , Sanjay Deshmane , Anindya Sudhir , Khushboo Sharma , Vaibhav Joshi

Decision trees are a popular machine learning model which are traditionally trained by heuristic methods. Massive improvements in computing power and optimisation techniques has led to renewed interest in learning globally optimal decision…

Optimization and Control · Mathematics 2025-11-25 Mitchell Keegan , Michael Forbes , Paul Corry , Mahdi Abolghasemi

Gradients of probabilistic model likelihoods with respect to their parameters are essential for modern computational statistics and machine learning. These calculations are readily available for arbitrary models via automatic…

Populations and Evolution · Quantitative Biology 2023-06-06 Mathieu Fourment , Christiaan J. Swanepoel , Jared G. Galloway , Xiang Ji , Karthik Gangavarapu , Marc A. Suchard , Frederick A. Matsen

Direct policy search (DPS) and look-ahead tree (LT) policies are two widely used classes of techniques to produce high performance policies for sequential decision-making problems. To make DPS approaches work well, one crucial issue is to…

Systems and Control · Computer Science 2015-03-20 Tobias Jung , Louis Wehenkel , Damien Ernst , Francis Maes