English
Related papers

Related papers: Exploring QSAR Models for Activity-Cliff Predictio…

200 papers

Machine learning (ML) of quantum mechanical properties shows promise for accelerating chemical discovery. For transition metal chemistry where accurate calculations are computationally costly and available training data sets are small, the…

Materials Science · Physics 2017-11-07 Jon Paul Janet , Heather J. Kulik

In this work, we investigate the possibility of improving multireference-driven coupled cluster (CC) approaches with an algorithm that iteratively combines complete active space (CAS) calculations with tailored CC and externally corrected…

Chemical Physics · Physics 2025-03-06 Robin Feldmann , Max Mörchen , Jakub Lang , Michał Lesiuk , Markus Reiher

Instructional alignment, the match between intended cognition and enacted activity, is central to effective instruction but hard to operationalize at scale. We examine alignment in cybersecurity simulations using multimodal traces from 23…

Human-Computer Interaction · Computer Science 2026-03-31 Conrad Borchers , Valdemar Švábenský , Sandesh K. Kafle , Kevin K. Tang , Jan Vykopal

Motivation: Drug discovery demands rapid quantification of compound-protein interaction (CPI). However, there is a lack of methods that can predict compound-protein affinity from sequences alone with high applicability, accuracy, and…

Biomolecules · Quantitative Biology 2020-12-17 Mostafa Karimi , Di Wu , Zhangyang Wang , Yang Shen

Quantitative structure-activity relationship (QSAR) modelling is effective 'bridge' to search the reliable relationship related bioactivity to molecular structure. A QSAR classification model contains a lager number of redundant, noisy and…

Machine Learning · Computer Science 2018-05-01 Liang-Yong Xia , Qing-Yong Wang

Lipid nanoparticles (LNPs) are highly effective carriers for gene therapies, including mRNA and siRNA delivery, due to their ability to transport nucleic acids across biological membranes, low cytotoxicity, improved pharmacokinetics, and…

Biomolecules · Quantitative Biology 2025-06-06 Gaurav Kumar , Arezoo M. Ardekani

The dichotomy between the challenging nature of obtaining annotations for activities, and the more straightforward nature of data collection from wearables, has resulted in significant interest in the development of techniques that utilize…

Machine Learning · Computer Science 2022-11-14 Harish Haresamudram , Irfan Essa , Thomas Ploetz

Molecular fingerprinting methods use hash functions to create fixed-length vector representations of molecules. However, hash collisions cause distinct substructures to be represented with the same feature, leading to overestimates in…

Machine Learning · Computer Science 2025-11-24 Walter Virany , Austin Tripp

Recently, deep learning has represented an important research trend in human activity recognition (HAR). In particular, deep convolutional neural networks (CNNs) have achieved state-of-the-art performance on various HAR datasets. For deep…

Computer Vision and Pattern Recognition · Computer Science 2020-06-16 Xin Cheng , Lei Zhang , Yin Tang , Yue Liu , Hao Wu , Jun He

High-dimensional, heterogeneous data with complex feature interactions pose significant challenges for traditional predictive modeling approaches. While Projection to Latent Structures (PLS) remains a popular technique, it struggles to…

Machine Learning · Computer Science 2025-10-21 Farwa Abbas , Hussain Ahmad , Claudia Szabo

Recently developed deep learning techniques have significantly improved the accuracy of various speech and image recognition systems. In this paper we adapt some of these techniques for protein secondary structure prediction. We first train…

Machine Learning · Computer Science 2016-11-07 Akosua Busia , Jasmine Collins , Navdeep Jaitly

Neuroscience and artificial intelligence (AI) both face the challenge of interpreting high-dimensional neural data, where the comparative analysis of such data is crucial for revealing shared mechanisms and differences between these complex…

Neurons and Cognition · Quantitative Biology 2025-09-16 Yiqing Bo , Ansh Soni , Sudhanshu Srivastava , Meenakshi Khosla

Molecular property prediction plays a fundamental role in drug discovery to identify candidate molecules with target properties. However, molecular property prediction is essentially a few-shot problem which makes it hard to use regular…

Machine Learning · Computer Science 2021-11-12 Yaqing Wang , Abulikemu Abuduweili , Quanming Yao , Dejing Dou

Human Activity Recognition (HAR) is a challenging problem that needs advanced solutions than using handcrafted features to achieve a desirable performance. Deep learning has been proposed as a solution to obtain more accurate HAR systems…

Machine Learning · Computer Science 2020-07-08 Hamed Damirchi , Rooholla Khorrambakht , Hamid Taghirad

Single-atom catalysts (SACs) have emerged as frontiers for catalyzing chemical reactions, yet the diverse combinations of active elements and support materials, the nature of coordination environments, elude traditional methodologies in…

Materials Science · Physics 2024-02-07 Haoyu Yang , Juanli Zhao , Qiankun Wang , Bin Liu , Wei Luo , Ziqi Sun , Ting Liao

Current state-of-the-art methods for skeleton-based action recognition are supervised and rely on labels. The reliance is limiting the performance due to the challenges involved in annotation and mislabeled data. Unsupervised methods have…

Computer Vision and Pattern Recognition · Computer Science 2020-12-09 Jingyuan Li , Eli Shlizerman

Since the introduction of artificial intelligence in medicinal chemistry, the necessity has emerged to analyse how molecular property variation is modulated by either single atoms or chemical groups. In this paper, we propose to train…

Biomolecules · Quantitative Biology 2022-02-14 Alessio Ragno , Dylan Savoia , Roberto Capobianco

In explainable AI, Concept Activation Vectors (CAVs) are typically obtained by training linear classifier probes to detect human-understandable concepts as directions in the activation space of deep neural networks. It is widely assumed…

Artificial Intelligence · Computer Science 2025-11-07 Jacob Lysnæs-Larsen , Marte Eggen , Inga Strümke

The intensity estimation of facial action units (AUs) is challenging due to subtle changes in the person's facial appearance. Previous approaches mainly rely on probabilistic models or predefined rules for modeling co-occurrence…

Computer Vision and Pattern Recognition · Computer Science 2020-04-22 Yingruo Fan , Jacqueline C. K. Lam , Victor O. K. Li

Coarse-grained (CG) models are often parametrized to reproduce one-dimensional structural correlation functions of an atomically-detailed model along the degrees of freedom governing each interaction potential. While cross correlations…

Soft Condensed Matter · Physics 2019-12-02 Svenja J. Woerner , Tristan Bereau , Kurt Kremer , Joseph F. Rudzinski