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Minimum flow decomposition (MFD) (the problem of finding a minimum set of paths that perfectly decomposes a flow) is a classical problem in Computer Science, and variants of it are powerful models in multiassembly problems in Bioinformatics…

Genomics · Quantitative Biology 2022-05-31 Fernando H. C. Dias , Lucia Williams , Brendan Mumey , Alexandru I. Tomescu

Given a flow network, the Minimum Flow Decomposition (MFD) problem is finding the smallest possible set of weighted paths whose superposition equals the flow. It is a classical, strongly NP-hard problem that is proven to be useful in RNA…

Genomics · Quantitative Biology 2023-11-20 Andreas Grigorjew , Fernando H. C. Dias , Andrea Cracco , Romeo Rizzi , Alexandru I. Tomescu

Minimum flow decomposition (MFD) -- the problem of finding a minimum set of weighted source-to-sink paths that perfectly decomposes a flow -- is a classical problem in Computer Science, and variants of it are powerful models in different…

Data Structures and Algorithms · Computer Science 2023-01-18 Fernando H. C. Dias , Lucia Williams , Brendan Mumey , Alexandru I. Tomescu

In Bioinformatics, the applications of flow decomposition in directed acyclic graphs are highlighted in RNA Assembly problem. However, it admits multiple solutions where exactly one solution correctly represents the underlying transcripts.…

Data Structures and Algorithms · Computer Science 2024-09-23 Bashar Ahmed , Siddharth Singh Rana , Ujjwal , Shahbaz Khan

Decomposing a network flow into weighted paths has numerous applications. Some applications require any decomposition that is optimal w.r.t. some property such as number of paths, robustness, or length. Many bioinformatic applications…

Data Structures and Algorithms · Computer Science 2022-01-26 Shahbaz Khan , Milla Kortelainen , Manuel Cáceres , Lucia Williams , Alexandru I. Tomescu

The Flow Decomposition problem, which asks for the smallest set of weighted paths that "covers" a flow on a DAG, has recently been used as an important computational step in transcript assembly. We prove the problem is in FPT when…

Data Structures and Algorithms · Computer Science 2017-08-31 Kyle Kloster , Philipp Kuinke , Michael P. O'Brien , Felix Reidl , Fernando Sánchez Villaamil , Blair D. Sullivan , Andrew van der Poel

Network flow is one of the most studied combinatorial optimization problems having innumerable applications. Any flow on a directed acyclic graph $G$ having $n$ vertices and $m$ edges can be decomposed into a set of $O(m)$ paths. In some…

Data Structures and Algorithms · Computer Science 2022-07-05 Shahbaz Khan , Alexandru I. Tomescu

Decomposing a flow on a Directed Acyclic Graph (DAG) into a weighted sum of a small number of paths is an essential task in operations research and bioinformatics. This problem, referred to as Sparse Flow Decomposition (SFD), has gained…

Optimization and Control · Mathematics 2025-07-22 Mathieu Besançon

Resilience is one of the key algorithmic problems underlying various forms of reverse data management (such as view maintenance, deletion propagation, and various interventions for fairness): What is the minimal number of tuples to delete…

Databases · Computer Science 2023-10-24 Neha Makhija , Wolfgang Gatterbauer

This document presents an Integer Linear Programming (ILP) approach to optimize pedestrian evacuation in flood-prone historic urban areas. The model aims to minimize total evacuation cost by integrating pedestrian speed, route length, and…

Physics and Society · Physics 2025-04-18 Fabrizio Marinelli , Andrea Pizzuti , Guido Romano , Gabriele Bernardini , Enrico Quagliarini

Multi-assembly methods rely at their core on a flow decomposition problem, namely, decomposing a weighted graph into weighted paths or walks. However, most results over the past decade have focused on decompositions over directed acyclic…

Data Structures and Algorithms · Computer Science 2025-11-25 Francisco Sena , Alexandru I. Tomescu

The secret protection problem (SPP) seeks to synthesize a minimum-cost policy ensuring that every execution from an initial state to a secret state includes a sufficient number of protected events. Previous work showed that the problem is…

Formal Languages and Automata Theory · Computer Science 2025-09-19 Tomáš Masopust , Jakub Večeřa

Integer programming (IP) has proven to be highly effective in solving many path-based optimization problems in robotics. However, the applications of IP are generally done in an ad-hoc, problem specific manner. In this work, after examined…

Robotics · Computer Science 2019-03-04 Shuai D. Han , Jingjin Yu

We study integer linear programs (ILP) of the form $\min\{c^\top x\ \vert\ Ax=b,l\le x\le u,x\in\mathbb Z^n\}$ and analyze their parameterized complexity with respect to their distance to the generalized matching problem, following the…

Computational Complexity · Computer Science 2025-10-20 Alexandra Lassota , Koen Ligthart

Despite major advancements in nonlinear programming (NLP) and convex relaxations, most system operators around the world still predominantly use some form of linear programming (LP) approximation of the AC power flow equations. This is…

Optimization and Control · Mathematics 2021-07-19 Sleiman , Mhanna , Pierluigi , Mancarella

Inspection planning is concerned with computing the shortest robot path to inspect a given set of points of interest (POIs) using the robot's sensors. This problem arises in a wide range of applications from manufacturing to medical…

Robotics · Computer Science 2026-05-12 Adir Morgan , Kiril Solovey , Oren Salzman

Linear Programming (LP) is widely applied in industry and is a key component of various other mathematical problem-solving techniques. Recent work introduced an LP compiler translating polynomial-time, polynomial-space algorithms into…

Programming Languages · Computer Science 2025-09-17 Shermin Khosravi , David Bremner

Many decision-making problems in engineering applications such as transportation, power system and operations research require repeatedly solving large-scale linear programming problems with a large number of different inputs. For example,…

Optimization and Control · Mathematics 2020-06-11 Yize Chen , Baosen Zhang

A path-covering problem on a directed acyclic graph (DAG) requires finding a set of source-to-sink paths that cover all the nodes, all the arcs, or subsets thereof, and additionally they are optimal with respect to some function. In this…

Data Structures and Algorithms · Computer Science 2025-09-05 Francisco Sena , Romeo Rizzi , Alexandru I. Tomescu

In this article we consider a certain sub class of Integer Equal Flow problem, which are known NP hard [8]. Currently there exist no direct solutions for the same. It is a common problem in various inventory management systems. Here we…

Artificial Intelligence · Computer Science 2019-12-11 Sasikanth Goteti , Swapnil Kumar
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