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Learning from electronic health records (EHRs) time series is challenging due to irregular sam- pling, heterogeneous missingness, and the resulting sparsity of observations. Prior self-supervised meth- ods either impute before learning,…

Machine Learning · Computer Science 2026-02-18 Xiao Xiang , David Restrepo , Hyewon Jeong , Yugang Jia , Leo Anthony Celi

Medical report generation is the task of automatically writing radiology reports for chest X-ray images. Manually composing these reports is a time-consuming process that is also prone to human errors. Generating medical reports can…

Computation and Language · Computer Science 2024-10-22 Abdullah , Ameer Hamza , Seong Tae Kim

The scarcity of annotated data in specialized domains such as medical imaging presents significant challenges to training robust vision models. While self-supervised masked image modeling (MIM) offers a promising solution, existing…

Computer Vision and Pattern Recognition · Computer Science 2025-10-07 Ruilang Wang , Shuotong Xu , Bowen Liu , Runlin Huang , Donglong Chen , Weifeng Su

Medical image interpretation is central to most clinical applications such as disease diagnosis, treatment planning, and prognostication. In clinical practice, radiologists examine medical images and manually compile their findings into…

Computer Vision and Pattern Recognition · Computer Science 2023-11-21 Nurbanu Aksoy , Nishant Ravikumar , Alejandro F Frangi

Understanding protein sequences is vital and urgent for biology, healthcare, and medicine. Labeling approaches are expensive yet time-consuming, while the amount of unlabeled data is increasing quite faster than that of the labeled data due…

Computation and Language · Computer Science 2021-11-01 Liang He , Shizhuo Zhang , Lijun Wu , Huanhuan Xia , Fusong Ju , He Zhang , Siyuan Liu , Yingce Xia , Jianwei Zhu , Pan Deng , Bin Shao , Tao Qin , Tie-Yan Liu

Unsupervised Continuous Anomaly Detection (UCAD) faces significant challenges in multi-task representation learning, with existing methods suffering from incomplete representation and catastrophic forgetting. Unlike supervised models,…

Computer Vision and Pattern Recognition · Computer Science 2025-02-11 You Zhou , Jiangshan Zhao , Deyu Zeng , Zuo Zuo , Weixiang Liu , Zongze Wu

In this work, we propose a novel straightforward method for medical volume and sequence segmentation with limited annotations. To avert laborious annotating, the recent success of self-supervised learning(SSL) motivates the pre-training on…

Computer Vision and Pattern Recognition · Computer Science 2023-10-04 Zejian Chen , Wei Zhuo , Tianfu Wang , Wufeng Xue , Dong Ni

Chest X-ray report generation and automated evaluation are limited by poor recognition of low-prevalence abnormalities and inadequate handling of clinically important language, including negation and ambiguity. We develop a clinician-guided…

Despite the impressive advances achieved using deep learning for functional brain activity analysis, the heterogeneity of functional patterns and the scarcity of imaging data still pose challenges in tasks such as identifying neurological…

Image and Video Processing · Electrical Eng. & Systems 2025-05-30 Wenhui Cui , Haleh Akrami , Anand A. Joshi , Richard M. Leahy

Medical multi-modal pre-training has revealed promise in computer-aided diagnosis by leveraging large-scale unlabeled datasets. However, existing methods based on masked autoencoders mainly rely on data-level reconstruction tasks, but lack…

Computer Vision and Pattern Recognition · Computer Science 2024-04-10 Yupei Zhang , Li Pan , Qiushi Yang , Tan Li , Zhen Chen

Learning Electronic Health Records (EHRs) representation is a preeminent yet under-discovered research topic. It benefits various clinical decision support applications, e.g., medication outcome prediction or patient similarity search.…

Machine Learning · Computer Science 2024-02-22 Hao-Ren Yao , Nairen Cao , Katina Russell , Der-Chen Chang , Ophir Frieder , Jeremy Fineman

Image-to-text radiology report generation aims to automatically produce radiology reports that describe the findings in medical images. Most existing methods focus solely on the image data, disregarding the other patient information…

Computer Vision and Pattern Recognition · Computer Science 2023-11-21 Nurbanu Aksoy , Serge Sharoff , Selcuk Baser , Nishant Ravikumar , Alejandro F Frangi

Masked Image Modeling (MIM) is a self-supervised learning technique that involves masking portions of an image, such as pixels, patches, or latent representations, and training models to predict the missing information using the visible…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Shabnam Choudhury , Akhil Vasim , Michael Schmitt , Biplab Banerjee

Pre-trained models, e.g., from ImageNet, have proven to be effective in boosting the performance of many downstream applications. It is too demanding to acquire large-scale annotations to build such models for medical imaging. Meanwhile,…

Computer Vision and Pattern Recognition · Computer Science 2021-03-31 Xiaosong Wang , Ziyue Xu , Leo Tam , Dong Yang , Daguang Xu

Undersampling is a common method in Magnetic Resonance Imaging (MRI) to subsample the number of data points in k-space, reducing acquisition times at the cost of decreased image quality. A popular approach is to employ undersampling…

Image and Video Processing · Electrical Eng. & Systems 2023-08-23 Tobias Weber , Michael Ingrisch , Bernd Bischl , David Rügamer

Large language models (LLMs) have demonstrated remarkable capabilities in various domains, including radiology report generation. Previous approaches have attempted to utilize multimodal LLMs for this task, enhancing their performance…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Wenjun Hou , Yi Cheng , Kaishuai Xu , Heng Li , Yan Hu , Wenjie Li , Jiang Liu

We systematically investigate lightweight strategies to adapt large language models (LLMs) for the task of radiology report summarization (RRS). Specifically, we focus on domain adaptation via pretraining (on natural language, biomedical…

The Impression section of a radiology report summarizes crucial radiology findings in natural language and plays a central role in communicating these findings to physicians. However, the process of generating impressions by summarizing…

Computation and Language · Computer Science 2018-10-10 Yuhao Zhang , Daisy Yi Ding , Tianpei Qian , Christopher D. Manning , Curtis P. Langlotz

Automated radiology report generation offers an effective solution to alleviate radiologists' workload. However, most existing methods focus primarily on single or fixed-view images to model current disease conditions, which limits…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Kang Liu , Zhuoqi Ma , Xiaolu Kang , Yunan Li , Kun Xie , Zhicheng Jiao , Qiguang Miao

Accurate detection and localization of traumatic injuries in abdominal CT scans remains a critical challenge in emergency radiology, primarily due to severe scarcity of annotated medical data. This paper presents a label-efficient approach…

Computer Vision and Pattern Recognition · Computer Science 2026-03-16 Shivam Chaudhary , Sheethal Bhat , Andreas Maier