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This thesis can be divided into two independent parts. In the first part of this thesis, we focus on studying the kinetic pathways of nucleation in colloidal systems. In Chapter 2, we briefly introduce the relevant theory of nucleation,…

Soft Condensed Matter · Physics 2012-08-17 Ran Ni

Understanding interactions between microparticles and lipid membranes is of increasing importance, especially for unraveling the influence of microplastics on our health and environment. Here, we study how a short-ranged adhesive force…

Soft Condensed Matter · Physics 2017-10-11 Casper van der Wel , Doris Heinrich , Daniela J. Kraft

The cell membrane deforms during endocytosis to surround extracellular material and draw it into the cell. Experiments on endocytosis in yeast all agree that (i) actin polymerizes into a network of filaments exerting active forces on the…

Cell Behavior · Quantitative Biology 2015-04-07 T. Zhang , R. Sknepnek , M. J. Bowick , J. M. Schwarz

We present a comprehensive numerical study of the phase behavior and dynamics of a three-dimensional active dumbbell system with attractive interactions. We demonstrate that attraction is essential for the system to exhibit nontrivial…

Soft Condensed Matter · Physics 2024-01-10 C. B. Caporusso , G. Negro , A. Suma , P. Digregorio , L. N. Carenza , G. Gonnella , L. F. Cugliandolo

Recent advances in micro- and nano-technologies allow the construction of complex active systems from biological and synthetic materials. An interesting example is active vesicles, which consist of a membrane enclosing self-propelled…

Soft Condensed Matter · Physics 2024-06-04 Priyanka Iyer , Gerhard Gompper , Dmitry A. Fedosov

We consider anisotropic colloidal particles immersed in a solution of long, flexible, and nonadsorbing polymers. For the dumbbell shapes of recently synthesized particles consisting of two intersecting spheres and for lens-shaped particles…

Statistical Mechanics · Physics 2009-11-11 E. Eisenriegler , A. Bringer

The entanglement and coherence of the wobbling mode are studied in the framework of the particle plus triaxial rotor model for the one-quasiparticle nucleus $^{135}$Pr and the two-quasiparticles nucleus $^{130}$Ba. The focus lies on the…

Nuclear Theory · Physics 2024-10-14 Q. B. Chen , S. Frauendorf

A method for determining permeability of phospholipid bilayer based on the osmotic swelling of micrometer-sized giant unilamellar vesicles (GUVs) is presented as an alternative to the two established techniques, dynamic light scattering on…

Biological Physics · Physics 2012-08-16 Primoz Peterlin , Vesna Arrigler , Haim Diamant , Emir Haleva

We study a system of self-propelled disks that perform run-and-tumble motion, where particles can adopt more than one internal state. One of those internal states can be transmitted to another particle if the particle carrying this state…

Biological Physics · Physics 2019-12-30 Fernando Peruani , Gustavo Sibona

We examine the budding of a nanoscale particle through a lipid bilayer using molecular dynamics simulations, free energy calculations, and an elastic theory, with the aim of determining the extent to which equilibrium elasticity theory can…

Subcellular Processes · Quantitative Biology 2012-02-22 Teresa Ruiz-Herrero , Enrique Velasco , Michael F. Hagan

In this work we demonstrate how the first order phase transition in giant unilamellar vesicles (GUVs) can function as a trigger for membrane fission. When driven through their gel-fluid phase transition GUVs exhibit budding or pearl…

Biological Physics · Physics 2010-05-26 C. Leirer , B. Wunderlich , V. M. Myles , M. F. Schneider

The interaction between nano- or micro-sized particles and cell membranes is of crucial importance in many biological and biomedical applications such as drug and gene delivery to cells and tissues. During their cellular uptake, the…

Within developing embryos, tissues flow and reorganize dramatically on timescales as short as minutes. This includes epithelial tissues, which often narrow and elongate in convergent extension movements due to anisotropies in external…

Tissues and Organs · Quantitative Biology 2020-06-24 Xun Wang , Matthias Merkel , Leo B. Sutter , Gonca Erdemci-Tandogan , M. Lisa Manning , Karen E. Kasza

Enveloped viruses enter host cells either through endocytosis, or by direct fusion of the viral membrane envelope and the membrane of the host cell. However, some viruses, such as HIV-1, HSV-1, and Epstein-Barr can enter a cell through…

Subcellular Processes · Quantitative Biology 2009-11-13 Sarah A. Nowak , Tom Chou

We introduce a novel model, comprising self-avoiding surfaces and incorporating edges and tubules, that is designed to characterize the structural morphologies and transitions observed within the endoplasmic reticulum (ER). By employing…

Soft Condensed Matter · Physics 2024-04-09 Jaya Kumar Alageshan , Yashodhan Hatwalne , Rahul Pandit

Studies of particle motion in vortical flows have mainly focused on point-like particles, either inertial or self-propelled. This approximation assumes that the velocity field that surrounds the particle is linear. We consider an…

Fluid Dynamics · Physics 2022-01-17 Sumithra Reddy Yerasi , Rama Govindarajan , Dario Vincenzi

The shape deformation of a three-dimensional axisymmetric vesicle with encapsulated filaments or impurities is analyzed by integrating a dissipation dynamics. This method can incorporate systematically the constraint of a fixed surface area…

Soft Condensed Matter · Physics 2009-11-07 Akiyoshi shibuya , Yukio Saito , Hiroyuki Hyuga

This work attempts to understand the mechanism of simultaneous electrodeformation and electroporation in Giant Unilamellar Vesicles (GUVs) using a minimal analytical model. In the small deformation limit, the coupled electroporation,…

Biological Physics · Physics 2025-10-15 Rochish M. Thaokar , Rupesh Kumar , Nalinikanta Behera , Mohammad Maoyafikuddin

Entry of micro- or nano-sized objects into cells or vesicles made of lipid membranes occur in many processes such as entry of viruses in host cells, microplastics pollution, drug delivery or biomedical imaging. Here, we investigated the…

Soft Condensed Matter · Physics 2023-05-24 Florent Fessler , Vaibhav Sharma , Pierre Muller , Antonio Stocco

Real-time deformability cytometry (RT-DC) enables high-throughput, contact-free mechanical characterization of soft microscopic objects. Here we apply this technique to giant unilamellar vesicles (GUVs). To interpret vesicle deformation in…

Biological Physics · Physics 2025-11-14 Maximilian Kloppe , Stefan J. Maurer , Tobias Abele , Kerstin Göpfrich , Sebastian Aland