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Joint 2D cardiac segmentation and 3D volume reconstruction are fundamental to building statistical cardiac anatomy models and understanding functional mechanisms from motion patterns. However, due to the low through-plane resolution of cine…

Computer Vision and Pattern Recognition · Computer Science 2022-06-16 Qi Chang , Zhennan Yan , Mu Zhou , Di Liu , Khalid Sawalha , Meng Ye , Qilong Zhangli , Mikael Kanski , Subhi Al Aref , Leon Axel , Dimitris Metaxas

Deep learning affords enormous opportunities to augment the armamentarium of biomedical imaging, albeit its design and implementation have potential flaws. Fundamentally, most deep learning models are driven entirely by data without…

Computer Vision and Pattern Recognition · Computer Science 2021-05-26 Liyue Shen , Wei Zhao , Dante Capaldi , John Pauly , Lei Xing

High-resolution phase-contrast 3D imaging using nano-holotomography typically requires collecting multiple tomograms at varying sample-to-detector distances, usually 3 to 4. This multi-distance approach significantly limits temporal…

A quest to determine the complete sequence of a human DNA from telomere to telomere started three decades ago and was finally completed in 2021. This accomplishment was a result of a tremendous effort of numerous experts who engineered…

Genomics · Quantitative Biology 2022-06-03 Lovro Vrček , Xavier Bresson , Thomas Laurent , Martin Schmitz , Mile Šikić

Tomographic imaging is useful for revealing the internal structure of a 3D sample. Classical reconstruction methods treat the object of interest as a vector to estimate its value. Such an approach, however, can be inefficient in analyzing…

Applications · Statistics 2022-04-06 Sanket R. Jantre , Zichao Wendy Di

Deep learning applied to the reconstruction of 3D shapes has seen growing interest. A popular approach to 3D reconstruction and generation in recent years has been the CNN encoder-decoder model usually applied in voxel space. However, this…

Computer Vision and Pattern Recognition · Computer Science 2020-05-12 Mateusz Michalkiewicz , Eugene Belilovsky , Mahsa Baktashmotlagh , Anders Eriksson

Automated sample preparation and electron microscopy enables acquisition of very large image data sets. These technical advances are of special importance to the field of neuroanatomy, as 3D reconstructions of neuronal processes at the nm…

Cellular electron cryo-tomography enables the 3D visualization of cellular organization in the near-native state and at submolecular resolution. However, the contents of cellular tomograms are often complex, making it difficult to…

Quantitative Methods · Quantitative Biology 2017-12-29 Xiangrui Zeng , Miguel Ricardo Leung , Tzviya Zeev-Ben-Mordehai , Min Xu

Establishing structure-property linkages in polycrystalline materials requires representative two- (2D) and three- (3D) dimensional microstructural inputs for full-field simulations. A core objective of microstructure characterization and…

Privacy protection of medical image data is challenging. Even if metadata is removed, brain scans are vulnerable to attacks that match renderings of the face to facial image databases. Solutions have been developed to de-identify diagnostic…

Image and Video Processing · Electrical Eng. & Systems 2021-10-20 Lennart Alexander Van der Goten , Tobias Hepp , Zeynep Akata , Kevin Smith

This paper proposes a novel model fitting algorithm for 3D facial expression reconstruction from a single image. Face expression reconstruction from a single image is a challenging task in computer vision. Most state-of-the-art methods fit…

Computer Vision and Pattern Recognition · Computer Science 2018-08-20 Fanzi Wu , Songnan Li , Tianhao Zhao , King Ngi Ngan , Lv Sheng

Characterizing the phase space distribution of particle beams in accelerators is a central part of accelerator understanding and performance optimization. However, conventional reconstruction-based techniques either use simplifying…

Reconstructing desired objects and scenes has long been a primary goal in 3D computer vision. Single-view point cloud reconstruction has become a popular technique due to its low cost and accurate results. However, single-view…

Computer Vision and Pattern Recognition · Computer Science 2024-12-13 Wenrui Li , Zhe Yang , Wei Han , Hengyu Man , Xingtao Wang , Xiaopeng Fan

Cellular Electron Cryo-Tomography (CECT) is a powerful imaging technique for the 3D visualization of cellular structure and organization at submolecular resolution. It enables analyzing the native structures of macromolecular complexes and…

Quantitative Methods · Quantitative Biology 2018-05-16 Chang Liu , Xiangrui Zeng , Ruogu Lin , Xiaodan Liang , Zachary Freyberg , Eric Xing , Min Xu

Reconstructing 3D clothed human involves creating a detailed geometry of individuals in clothing, with applications ranging from virtual try-on, movies, to games. To enable practical and widespread applications, recent advances propose to…

Computer Vision and Pattern Recognition · Computer Science 2024-04-22 Yifan Yang , Dong Liu , Shuhai Zhang , Zeshuai Deng , Zixiong Huang , Mingkui Tan

With the increasing demands of applications in virtual reality such as 3D films, virtual Human-Machine Interactions and virtual agents, the analysis of 3D human face analysis is considered to be more and more important as a fundamental step…

Computer Vision and Pattern Recognition · Computer Science 2017-04-25 Shu Zhang , Hui Yu , Ting Wang , Junyu Dong , Honghai Liu

Next-generation sequencing (NGS) technologies allow new methodologies for alternative splicing (AS) analysis. Current computational methods for AS from NGS data are mainly focused on predicting splice site junctions or de novo assembly of…

Genomics · Quantitative Biology 2012-08-15 Stefano Beretta , Paola Bonizzoni , Gianluca Della Vedova , Raffaella Rizzi

Single-image room layout reconstruction aims to reconstruct the enclosed 3D structure of a room from a single image. Most previous work relies on the cuboid-shape prior. This paper considers a more general indoor assumption, i.e., the room…

Computer Vision and Pattern Recognition · Computer Science 2021-10-12 Cheng Yang , Jia Zheng , Xili Dai , Rui Tang , Yi Ma , Xiaojun Yuan

3D shape reconstruction is essential in the navigation of minimally-invasive and auto robot-guided surgeries whose operating environments are indirect and narrow, and there have been some works that focused on reconstructing the 3D shape of…

Image and Video Processing · Electrical Eng. & Systems 2021-10-13 Bowen Hu , Baiying Lei , Shuqiang Wang , Yong Liu , Bingchuan Wang , Min Gan , Yanyan Shen

In this paper, we introduce a method to build an adapted mesh representation of a 3D object for X-Ray tomography reconstruction. Using this representation, we provide means to reduce the computational cost of reconstruction by way of…

Computer Vision and Pattern Recognition · Computer Science 2015-07-30 Anthony Cazasnoves , Fanny Buyens , Sylvie Sevestre