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Automated cell detection and localization from microscopy images are significant tasks in biomedical research and clinical practice. In this paper, we design a new cell detection and localization algorithm that combines deep convolutional…

Computer Vision and Pattern Recognition · Computer Science 2018-10-09 Yao Xue , Gilbert Bigras , Judith Hugh , Nilanjan Ray

Convolutional neural networks are state-of-the-art for various segmentation tasks. While for 2D images these networks are also computationally efficient, 3D convolutions have huge storage requirements and therefore, end-to-end training is…

Computer Vision and Pattern Recognition · Computer Science 2022-02-01 Christoph Angermann , Markus Haltmeier

Deep convolutional neural networks (CNNs) have been intensively used for multi-class segmentation of data from different modalities and achieved state-of-the-art performances. However, a common problem when dealing with large, high…

Computer Vision and Pattern Recognition · Computer Science 2018-04-13 Chengjia Wang , Tom MacGillivray , Gillian Macnaught , Guang Yang , David Newby

Single cell segmentation is critical and challenging in live cell imaging data analysis. Traditional image processing methods and tools require time-consuming and labor-intensive efforts of manually fine-tuning parameters. Slight variations…

Quantitative Methods · Quantitative Biology 2019-04-24 Weikang Wang , David A. Taft , Yi-Jiun Chen , Jingyu Zhang , Callen T. Wallace , Min Xu , Simon C. Watkins , Jianhua Xing

Deep learning techniques have successfully been employed in numerous computer vision tasks including image segmentation. The techniques have also been applied to medical image segmentation, one of the most critical tasks in computer-aided…

Computer Vision and Pattern Recognition · Computer Science 2020-06-30 Titinunt Kitrungrotsakul , Iwamoto Yutaro , Lanfen Lin , Ruofeng Tong , Jingsong Li , Yen-Wei Chen

3D image segmentation plays an important role in biomedical image analysis. Many 2D and 3D deep learning models have achieved state-of-the-art segmentation performance on 3D biomedical image datasets. Yet, 2D and 3D models have their own…

Computer Vision and Pattern Recognition · Computer Science 2018-12-11 Hao Zheng , Yizhe Zhang , Lin Yang , Peixian Liang , Zhuo Zhao , Chaoli Wang , Danny Z. Chen

Semantic segmentation networks are usually pre-trained once and not updated during deployment. As a consequence, misclassifications commonly occur if the distribution of the training data deviates from the one encountered during the robot's…

Robotics · Computer Science 2023-02-15 Jonas Frey , Hermann Blum , Francesco Milano , Roland Siegwart , Cesar Cadena

The goal of this work is to replace objects in an RGB-D scene with corresponding 3D models from a library. We approach this problem by first detecting and segmenting object instances in the scene using the approach from Gupta et al. [13].…

Computer Vision and Pattern Recognition · Computer Science 2015-02-17 Saurabh Gupta , Pablo Arbeláez , Ross Girshick , Jitendra Malik

In this paper we present a methodology that uses convolutional neural networks (CNNs) for segmentation by iteratively growing predicted mask regions in each coordinate direction. The CNN is used to predict class probability scores in a…

Image and Video Processing · Electrical Eng. & Systems 2020-09-25 John Lagergren , Erica Rutter , Kevin Flores

We present an approach to learn a dense pixel-wise labeling from image-level tags. Each image-level tag imposes constraints on the output labeling of a Convolutional Neural Network (CNN) classifier. We propose Constrained CNN (CCNN), a…

Computer Vision and Pattern Recognition · Computer Science 2015-10-20 Deepak Pathak , Philipp Krähenbühl , Trevor Darrell

Automated medical image segmentation is becoming increasingly crucial to modern clinical practice, driven by the growing demand for precise diagnosis, the push towards personalized treatment plans, and the advancements in machine learning…

Image and Video Processing · Electrical Eng. & Systems 2023-11-13 Tan-Hanh Pham , Xianqi Li , Kim-Doang Nguyen

Convolutional neural networks (CNNs) have shown remarkable results over the last several years for a wide range of computer vision tasks. A new architecture recently introduced by Sabour et al., referred to as a capsule networks with…

Machine Learning · Statistics 2018-10-15 Rodney LaLonde , Ulas Bagci

Cell segmentation is essential in biomedical research for analyzing cellular morphology and behavior. Deep learning methods, particularly convolutional neural networks (CNNs), have revolutionized cell segmentation by extracting intricate…

Image and Video Processing · Electrical Eng. & Systems 2024-08-27 Boyuan Peng , Jiaju Chen , P. Bilha Githinji , Ijaz Gul , Qihui Ye , Minjiang Chen , Peiwu Qin , Xingru Huang , Chenggang Yan , Dongmei Yu , Jiansong Ji , Zhenglin Chen

Tensor networks are efficient factorisations of high-dimensional tensors into a network of lower-order tensors. They have been most commonly used to model entanglement in quantum many-body systems and more recently are witnessing increased…

Computer Vision and Pattern Recognition · Computer Science 2022-02-24 Raghavendra Selvan , Erik B Dam , Søren Alexander Flensborg , Jens Petersen

CNNs have been widely applied for medical image analysis. However, limited memory capacity is one of the most common drawbacks of processing high-resolution 3D volumetric data. 3D volumes are usually cropped or downsized first before…

Image and Video Processing · Electrical Eng. & Systems 2023-08-25 Nyothiri Aung , Tahar Kechadi , Liming Chen , Sahraoui Dhelim

Segmentation of white matter lesions and deep grey matter structures is an important task in the quantification of magnetic resonance imaging in multiple sclerosis. In this paper we explore segmentation solutions based on convolutional…

Deep learning based medical image segmentation models usually require large datasets with high-quality dense segmentations to train, which are very time-consuming and expensive to prepare. One way to tackle this challenge is by using the…

Computer Vision and Pattern Recognition · Computer Science 2019-08-27 Duo Wang , Ming Li , Nir Ben-Shlomo , C. Eduardo Corrales , Yu Cheng , Tao Zhang , Jagadeesan Jayender

Medical image segmentation, particularly in multi-domain scenarios, requires precise preservation of anatomical structures across diverse representations. While deep learning has advanced this field, existing models often struggle with…

Computer Vision and Pattern Recognition · Computer Science 2025-05-27 Afshin Bozorgpour , Sina Ghorbani Kolahi , Reza Azad , Ilker Hacihaliloglu , Dorit Merhof

The accurate segmentation of multiple types of lesions from adjacent tissues in medical images is significant in clinical practice. Convolutional neural networks (CNNs) based on the coarse-to-fine strategy have been widely used in this…

Image and Video Processing · Electrical Eng. & Systems 2021-10-12 Xiangyu Zhao , Peng Zhang , Fan Song , Chenbin Ma , Guangda Fan , Yangyang Sun , Youdan Feng , Guanglei Zhang

Among 2D convolutional networks on point clouds, point-based approaches consume point clouds of fixed size directly. By analysis of PointNet, a pioneer in introducing deep learning into point sets, we reveal that current point-based methods…

Computer Vision and Pattern Recognition · Computer Science 2021-08-11 Zhenpeng Chen , Yuan li