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We study a variant of classical clustering formulations in the context of algorithmic fairness, known as diversity-aware clustering. In this variant we are given a collection of facility subsets, and a solution must contain at least a…

Data Structures and Algorithms · Computer Science 2022-10-25 Suhas Thejaswi , Ameet Gadekar , Bruno Ordozgoiti , Michal Osadnik

Network of nonlinear dynamical elements often show clustering of synchronization by chaotic instability. Relevance of the clustering to ecological, immune, neural, and cellular networks is discussed, with the emphasis of partially ordered…

chao-dyn · Physics 2009-10-22 Kunihiko Kaneko

Hierarchical clustering (HC) algorithms are generally limited to small data instances due to their runtime costs. Here we mitigate this shortcoming and explore fast HC algorithms based on random projections for single (SLC) and average…

Information Retrieval · Computer Science 2014-01-24 Johannes Schneider , Michail Vlachos

Hierarchical clustering is a fundamental task often used to discover meaningful structures in data, such as phylogenetic trees, taxonomies of concepts, subtypes of cancer, and cascades of particle decays in particle physics. Typically…

Data Structures and Algorithms · Computer Science 2020-10-23 Craig S. Greenberg , Sebastian Macaluso , Nicholas Monath , Ji-Ah Lee , Patrick Flaherty , Kyle Cranmer , Andrew McGregor , Andrew McCallum

The Big Data phenomenon has spawned large-scale linear programming problems. In many cases, these problems are non-stationary. In this paper, we describe a new scalable algorithm called NSLP for solving high-dimensional, non-stationary…

Data Structures and Algorithms · Computer Science 2017-11-13 Irina Sokolinskaya , Leonid B. Sokolinsky

Given a graph with positive and negative edge labels, the correlation clustering problem aims to cluster the nodes so to minimize the total number of between-cluster positive and within-cluster negative edges. This problem has many…

Data Structures and Algorithms · Computer Science 2024-06-17 Mina Dalirrooyfard , Konstantin Makarychev , Slobodan Mitrović

Correlation Clustering is a fundamental and widely-studied problem in unsupervised learning and data mining. The input is a graph and the goal is to construct a clustering minimizing the number of inter-cluster edges plus the number of…

Data Structures and Algorithms · Computer Science 2025-11-05 Nairen Cao , Vincent Cohen-Addad , Shi Li , Euiwoong Lee , David Rasmussen Lolck , Alantha Newman , Mikkel Thorup , Lukas Vogl , Shuyi Yan , Hanwen Zhang

Dynamic programming is widely used for exact computations based on tree decompositions of graphs. However, the space complexity is usually exponential in the treewidth. We study the problem of designing efficient dynamic programming…

Data Structures and Algorithms · Computer Science 2014-06-16 Martin Furer , Huiwen Yu

Clustering algorithms aim to organize data into groups or clusters based on the inherent patterns and similarities within the data. They play an important role in today's life, such as in marketing and e-commerce, healthcare, data…

Machine Learning · Computer Science 2024-01-17 Hui Yin , Amir Aryani , Stephen Petrie , Aishwarya Nambissan , Aland Astudillo , Shengyuan Cao

In projective clustering we are given a set of n points in $R^d$ and wish to cluster them to a set $S$ of $k$ linear subspaces in $R^d$ according to some given distance function. An $\eps$-coreset for this problem is a weighted (scaled)…

Data Structures and Algorithms · Computer Science 2020-11-30 Adiel Statman , Liat Rozenberg , Dan Feldman

We study Clustered Planarity with Linear Saturators, which is the problem of augmenting an $n$-vertex planar graph whose vertices are partitioned into independent sets (called clusters) with paths - one for each cluster - that connect all…

Data Structures and Algorithms · Computer Science 2024-10-01 Giordano Da Lozzo , Robert Ganian , Siddharth Gupta , Bojan Mohar , Sebastian Ordyniak , Meirav Zehavi

This paper studies clustering algorithms for dynamically evolving graphs $\{G_t\}$, in which new edges (and potential new vertices) are added into a graph, and the underlying cluster structure of the graph can gradually change. The paper…

Data Structures and Algorithms · Computer Science 2024-06-06 Steinar Laenen , He Sun

We address the problem of clustering a set of points in $\mathbb{R}^d$ with axis-parallel clusters. Previous exact approaches to this problem are mostly based on integer programming formulations and can only solve to optimality instances of…

Discrete Mathematics · Computer Science 2024-10-16 Diego Delle Donne , Javier Marenco , Eduardo Moreno

Dynamic networks represent the complex and evolving interrelationships between real-world entities. Given the scale and variability of these networks, finding an optimal slicing interval is essential for meaningful analysis. Nonuniform…

Human-Computer Interaction · Computer Science 2024-04-10 Seokweon Jung , DongHwa Shin , Hyeon Jeon , Jinwook Seo

In this paper, we present a new approach of distributed clustering for spatial datasets, based on an innovative and efficient aggregation technique. This distributed approach consists of two phases: 1) local clustering phase, where each…

Databases · Computer Science 2018-02-05 Malika Bendechache , Nhien-An Le-Khac , M-Tahar Kechadi

This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

The aim of the paper is to introduce general techniques in order to optimize the parallel execution time of sorting on a distributed architectures with processors of various speeds. Such an application requires a partitioning step. For…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-08-16 Christophe Cérin , Jean-Christophe Dubacq , Jean-Louis Roch , the SafeScale Collaboration

Biclustering has proved to be a powerful data analysis technique due to its wide success in various application domains. However, the existing literature presents efficient solutions only for enumerating maximal biclusters with constant…

Discrete Mathematics · Computer Science 2015-07-24 Rosana Veroneze , Arindam Banerjee , Fernando J. Von Zuben

Following the work of arXiv:2101.09512, we are interested in clustering a given multi-variate series in an unsupervised manner. We would like to segment and cluster the series such that the resulting blocks present in each cluster are…

We study the theoretical and practical runtime limits of k-means and k-median clustering on large datasets. Since effectively all clustering methods are slower than the time it takes to read the dataset, the fastest approach is to quickly…

Machine Learning · Computer Science 2024-04-03 Andrew Draganov , David Saulpic , Chris Schwiegelshohn