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Deep learning methods exhibit promising performance for predictive modeling in healthcare, but two important challenges remain: -Data insufficiency:Often in healthcare predictive modeling, the sample size is insufficient for deep learning…

Machine Learning · Computer Science 2017-04-04 Edward Choi , Mohammad Taha Bahadori , Le Song , Walter F. Stewart , Jimeng Sun

Motivation: Biological data and knowledge bases increasingly rely on Semantic Web technologies and the use of knowledge graphs for data integration, retrieval and federated queries. In the past years, feature learning methods that are…

Quantitative Methods · Quantitative Biology 2017-05-01 Mona Alshahrani , Mohammed Asif Khan , Omar Maddouri , Akira R Kinjo , Núria Queralt-Rosinach , Robert Hoehndorf

Tackling molecular optimization problems using conventional computational methods is challenging, because the determination of the optimized configuration is known to be an NP-hard problem. Recently, there has been increasing interest in…

Applied Physics · Physics 2021-08-24 Eshan Joshi , Samuel Somuyiwa , Hossein Z. Jooya

In many domains, the previous decade was characterized by increasing data volumes and growing complexity of computational workloads, creating new demands for highly data-parallel computing in distributed systems. Effective operation of…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-25 Carl Witt , Marc Bux , Wladislaw Gusew , Ulf Leser

Embedding methods which enforce a partial order or lattice structure over the concept space, such as Order Embeddings (OE) (Vendrov et al., 2016), are a natural way to model transitive relational data (e.g. entailment graphs). However, OE…

Machine Learning · Statistics 2018-05-18 Luke Vilnis , Xiang Li , Shikhar Murty , Andrew McCallum

We present a neural framework for learning conditional optimal transport (OT) maps between probability distributions. Our approach introduces a conditioning mechanism capable of processing both categorical and continuous conditioning…

Machine Learning · Computer Science 2026-04-02 Carlos Rodriguez-Pardo , Leonardo Chiani , Emanuele Borgonovo , Massimo Tavoni

Ontology matching is a core task when creating interoperable and linked open datasets. In this paper, we explore a novel structure-based mapping approach which is based on knowledge graph embeddings: The ontologies to be matched are…

Artificial Intelligence · Computer Science 2022-04-11 Jan Portisch , Guilherme Costa , Karolin Stefani , Katharina Kreplin , Michael Hladik , Heiko Paulheim

Neural networks have proven to be effective at solving machine learning tasks but it is unclear whether they learn any relevant causal relationships, while their black-box nature makes it difficult for modellers to understand and debug…

Machine Learning · Computer Science 2023-08-02 Fabrizio Russo , Francesca Toni

In this paper I present a practical approach for coupling machine learning (ML) algorithms with knowledge bases (KB) ontology formalism. The lack of availability of prior knowledge in dynamic scenarios is without doubt a major barrier for…

Robotics · Computer Science 2024-07-04 Osama F. Zaki

Many problems, especially those with a composite structure, can naturally be expressed in higher order logic. From a KR perspective modeling these problems in an intuitive way is a challenging task. In this paper we study the graph mining…

Logic in Computer Science · Computer Science 2016-09-01 Matthias van der Hallen , Sergey Paramonov , Michael Leuschel , Gerda Janssens

Human knowledge provides a formal understanding of the world. Knowledge graphs that represent structural relations between entities have become an increasingly popular research direction towards cognition and human-level intelligence. In…

Computation and Language · Computer Science 2021-04-02 Shaoxiong Ji , Shirui Pan , Erik Cambria , Pekka Marttinen , Philip S. Yu

The increasing digitalization of the manufacturing domain requires adequate knowledge modeling to capture relevant information. Ontologies and Knowledge Graphs provide means to model and relate a wide range of concepts, problems, and…

Artificial Intelligence · Computer Science 2021-07-07 Jože M. Rožanec , Inna Novalija , d Patrik Zajec , Klemen Kenda , Dunja Mladenić

One characteristic that sets humans apart from modern learning-based computer vision algorithms is the ability to acquire knowledge about the world and use that knowledge to reason about the visual world. Humans can learn about the…

Computer Vision and Pattern Recognition · Computer Science 2017-04-25 Kenneth Marino , Ruslan Salakhutdinov , Abhinav Gupta

Bayesian optimization (BO) is a powerful framework for optimizing expensive black-box objectives, yet extending it to graph-structured domains remains challenging due to the discrete and combinatorial nature of graphs. Existing approaches…

Machine Learning · Computer Science 2025-11-12 Shu Hong , Yongsheng Mei , Mahdi Imani , Tian Lan

Logistics optimization nowadays is becoming one of the hottest areas in the AI community. In the past year, significant advancements in the domain were achieved by representing the problem in a form of graph. Another promising area of…

Machine Learning · Computer Science 2022-05-26 Zangir Iklassov , Dmitrii Medvedev

Knowledge Graph Completion has been increasingly adopted as a useful method for helping address several tasks in biomedical research, such as drug repurposing or drug-target identification. To that end, a variety of datasets and Knowledge…

Machine Learning · Computer Science 2025-11-07 Alberto Cattaneo , Stephen Bonner , Thomas Martynec , Edward Morrissey , Carlo Luschi , Ian P Barrett , Daniel Justus

The ability of knowledge graphs to represent complex relationships at scale has led to their adoption for various needs including knowledge representation, question-answering, and recommendation systems. Knowledge graphs are often…

Computation and Language · Computer Science 2023-05-18 Jason Youn , Ilias Tagkopoulos

Recent works on machine learning for combinatorial optimization have shown that learning based approaches can outperform heuristic methods in terms of speed and performance. In this paper, we consider the problem of finding an optimal…

Knowledge graphs represent facts about real-world entities. Most of these facts are defined as positive statements. The negative statements are scarce but highly relevant under the open-world assumption. Furthermore, they have been…

Artificial Intelligence · Computer Science 2023-11-16 Rita T. Sousa , Sara Silva , Catia Pesquita

Large Language Models bear the promise of significant acceleration of key Knowledge Graph and Ontology Engineering tasks, including ontology modeling, extension, modification, population, alignment, as well as entity disambiguation. We lay…

Artificial Intelligence · Computer Science 2024-11-15 Cogan Shimizu , Pascal Hitzler
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