Related papers: Sliding Window String Indexing in Streams
Space complexity is a critical factor in various computational models, including streaming, parallel/distributed computing, and communication complexity. We study the space complexity of the minimum-cost flow problem, a generalization of…
Two decades ago, a breakthrough in indexing string collections made it possible to represent them within their compressed space while at the same time offering indexed search functionalities. As this new technology permeated through…
Analyzing patterns in a sequence of events has applications in text analysis, computer programming, and genomics research. In this paper, we consider the all-window-length analysis model which analyzes a sequence of events with respect to…
In the $k$-mismatch problem we are given a pattern of length $n$ and a text and must find all locations where the Hamming distance between the pattern and the text is at most $k$. A series of recent breakthroughs have resulted in an…
One way of getting a better view of data is using frequent patterns. In this paper frequent patterns are subsets that occur a minimal number of times in a stream of itemsets. However, the discovery of frequent patterns in streams has always…
We revisit various string indexing problems with range reporting features, namely, position-restricted substring searching, indexing substrings with gaps, and indexing substrings with intervals. We obtain the following main results.…
We initiate the study of numerical linear algebra in the sliding window model, where only the most recent $W$ updates in a stream form the underlying data set. We first introduce a unified row-sampling based framework that gives randomized…
In this paper we introduce a notion of planarity for graphs that are presented in a streaming fashion. A $\textit{streamed graph}$ is a stream of edges $e_1,e_2,...,e_m$ on a vertex set $V$. A streamed graph is $\omega$-$\textit{stream…
Given strings $P$ of length $m$ and $T$ of length $n$ over an alphabet of size $\sigma$, the string matching with $k$-mismatches problem is to find the positions of all the substrings in $T$ that are at Hamming distance at most $k$ from…
This paper presents an evolutionary algorithm for modeling the arrival dates of document streams, which is any time-stamped collection of documents, such as newscasts, e-mails, IRC conversations, scientific journals archives and weblog…
In the sliding window model, we are required to maintain the target statistics over the most recent $n$ elements of a data stream, which is captured by a window of size $n$ sliding over the data stream. Exact computation usually requires…
In this paper, we describe a new type of match between a pattern and a text that aren't necessarily maximal in the query, but still contain useful matching information: locally maximal exact matches (LEMs). There are usually a large amount…
In this paper we give an algorithm for streaming $k$-edit approximate pattern matching which uses space $\widetilde{O}(k^2)$ and time $\widetilde{O}(k^2)$ per arriving symbol. This improves substantially on the recent algorithm of…
A parameterized string (p-string) is a string over an alphabet $(\Sigma_{s} \cup \Sigma_{p})$, where $\Sigma_{s}$ and $\Sigma_{p}$ are disjoint alphabets for static symbols (s-symbols) and for parameter symbols (p-symbols), respectively.…
We study sketching and streaming algorithms for the Longest Common Subsequence problem (LCS) on strings of small alphabet size $|\Sigma|$. For the problem of deciding whether the LCS of strings $x,y$ has length at least $L$, we obtain a…
In the longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, and we are asked to find a longest string occurring as a fragment of both $S$ and $T$. This is a classical and well-studied…
Graph streams represent data interactions in real applications. The mining of graph streams plays an important role in network security, social network analysis, and traffic control, among others. However, the sheer volume and high dynamics…
We revisit the $k$-mismatch problem in the streaming model on a pattern of length $m$ and a streaming text of length $n$, both over a size-$\sigma$ alphabet. The current state-of-the-art algorithm for the streaming $k$-mismatch problem, by…
In the Dictionary-based String Matching (DSM) problem, a retrieval system has access to a source sequence and stores the position of a certain number of strings in a posting table. When a user inquires the position of a string, the…
We present parameterized streaming algorithms for the graph matching problem in both the dynamic and the insert-only models. For the dynamic streaming model, we present a one-pass algorithm that, with high probability, computes a…