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While Graph Neural Networks (GNNs) have achieved enormous success in multiple graph analytical tasks, modern variants mostly rely on the strong inductive bias of homophily. However, real-world networks typically exhibit both homophilic and…

Machine Learning · Computer Science 2024-09-18 Jingwei Guo , Kaizhu Huang , Rui Zhang , Xinping Yi

We bridge two research directions on graph neural networks (GNNs), by formalizing the relation between heterophily of node labels (i.e., connected nodes tend to have dissimilar labels) and the robustness of GNNs to adversarial attacks. Our…

Machine Learning · Computer Science 2022-07-26 Jiong Zhu , Junchen Jin , Donald Loveland , Michael T. Schaub , Danai Koutra

With the widespread use of Graph Neural Networks (GNNs) for representation learning from network data, the fairness of GNN models has raised great attention lately. Fair GNNs aim to ensure that node representations can be accurately…

Social and Information Networks · Computer Science 2024-10-23 Guixian Zhang , Guan Yuan , Debo Cheng , Lin Liu , Jiuyong Li , Shichao Zhang

Graph Neural Networks (GNNs) are proficient in graph representation learning and achieve promising performance on versatile tasks such as node classification and link prediction. Usually, a comprehensive hyperparameter tuning is essential…

Machine Learning · Computer Science 2024-10-10 Lequan Lin , Dai Shi , Andi Han , Zhiyong Wang , Junbin Gao

In this paper, we study using graph neural networks (GNNs) for \textit{multi-node representation learning}, where a representation for a set of more than one node (such as a link) is to be learned. Existing GNNs are mainly designed to learn…

Machine Learning · Computer Science 2025-03-11 Xiyuan Wang , Pan Li , Muhan Zhang

Signed graphs are powerful models for representing complex relations with both positive and negative connections. Recently, Signed Graph Neural Networks (SGNNs) have emerged as potent tools for analyzing such graphs. To our knowledge, no…

Machine Learning · Computer Science 2024-11-28 Zeyu Zhang , Lu Li , Xingyu Ji , Kaiqi Zhao , Xiaofeng Zhu , Philip S. Yu , Jiawei Li , Maojun Wang

Community detection in graphs aims to cluster nodes into meaningful groups, a task particularly challenging in heterophilic graphs, where nodes sharing similarities and membership to the same community are typically distantly connected.…

Social and Information Networks · Computer Science 2025-08-21 William Leeney , Alessio Gravina , Davide Bacciu

Machine learning, and representation learning in particular, has the potential to facilitate drug discovery by screening billions of compounds. For example, a successful approach is representing the molecules as a graph and utilizing graph…

Quantitative Methods · Quantitative Biology 2023-04-17 Ronen Taub , Tanya Wasserman , Yonatan Savir

Graph Neural Networks (GNNs) have achieved state-of-the-art results in node classification tasks. However, most improvements are in multi-class classification, with less focus on the cases where each node could have multiple labels. The…

Machine Learning · Computer Science 2024-06-19 Tianqi Zhao , Ngan Thi Dong , Alan Hanjalic , Megha Khosla

Graph neural networks (GNNs) are emerging machine learning models on graphs. Permutation-equivariance and proximity-awareness are two important properties highly desirable for GNNs. Both properties are needed to tackle some challenging…

Machine Learning · Computer Science 2022-02-23 Ziwei Zhang , Chenhao Niu , Peng Cui , Jian Pei , Bo Zhang , Wenwu Zhu

The recent rapid growth in mobile data traffic entails a pressing demand for improving the throughput of the underlying wireless communication networks. Network node deployment has been considered as an effective approach for throughput…

Networking and Internet Architecture · Computer Science 2022-09-16 Yifei Yang , Dongmian Zou , Xiaofan He

Graph Convolutional Networks (GCNs) gained traction for graph representation learning, with recent attention on improving performance on heterophilic graphs for various real-world applications. The localized feature aggregation in a typical…

Machine Learning · Computer Science 2025-07-30 Garv Kaushik

Message passing Graph Neural Networks (GNNs) provide a powerful modeling framework for relational data. However, the expressive power of existing GNNs is upper-bounded by the 1-Weisfeiler-Lehman (1-WL) graph isomorphism test, which means…

Machine Learning · Computer Science 2021-02-08 Jiaxuan You , Jonathan Gomes-Selman , Rex Ying , Jure Leskovec

Pre-propagation graph neural networks (PPGNNs) decouple node feature propagation from transformation: graph diffusion is performed once as preprocessing, and training reduces to dense per-node transformations. This design enables mini-batch…

Machine Learning · Computer Science 2026-05-26 Zichao Yue , Zhiru Zhang

Signed link prediction in graphs is an important problem that has applications in diverse domains. It is a binary classification problem that predicts whether an edge between a pair of nodes is positive or negative. Existing approaches for…

Social and Information Networks · Computer Science 2022-01-19 Roshni Chakraborty , Ritwika Das , Joydeep Chandra

Graph Neural Networks (GNNs) are popular machine learning methods for modeling graph data. A lot of GNNs perform well on homophily graphs while having unsatisfactory performance on heterophily graphs. Recently, some researchers turn their…

Machine Learning · Computer Science 2022-09-20 Wendong Bi , Lun Du , Qiang Fu , Yanlin Wang , Shi Han , Dongmei Zhang

Graph neural networks (GNNs) have achieved great success in many graph learning tasks. The main aspect powering existing GNNs is the multi-layer network architecture to learn the nonlinear graph representations for the specific learning…

Machine Learning · Computer Science 2022-02-21 Beibei Wang , Bo Jiang

Graph Neural Networks (GNNs) achieve state-of-the-art performance on graph-structured data across numerous domains. Their underlying ability to represent nodes as summaries of their vicinities has proven effective for homophilous graphs in…

Machine Learning · Computer Science 2022-12-27 Andrea Cavallo , Claas Grohnfeldt , Michele Russo , Giulio Lovisotto , Luca Vassio

Graph alignment, the problem of identifying corresponding nodes across multiple graphs, is fundamental to numerous applications. Most existing unsupervised methods embed node features into latent representations to enable cross-graph…

Machine Learning · Computer Science 2025-09-30 Maysam Behmanesh , Erkan Turan , Maks Ovsjanikov

Graph neural networks (GNNs) can learn effective node representations that significantly improve link prediction accuracy. However, most GNN-based link prediction algorithms are incompetent to predict weak ties connecting different…

Social and Information Networks · Computer Science 2024-10-22 Weiwei Gu , Linbi Lv , Gang Lu , Ruiqi Li