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Biological and cellular systems are often modeled as graphs in which vertices represent objects of interest (genes, proteins, drugs) and edges represent relational ties among these objects (binds-to, interacts-with, regulates). This…

Machine Learning · Statistics 2017-03-16 Jose Lugo-Martinez , Predrag Radivojac

The k-core decomposition of a network has thus far mainly served as a powerful tool for the empirical study of complex networks. We now propose its explicit integration in a theoretical model. We introduce a Hard-core Random Network model…

Physics and Society · Physics 2014-02-11 Laurent Hébert-Dufresne , Antoine Allard , Jean-Gabriel Young , Louis J. Dubé

By representing knowledge in a primary triple associated with additional attribute-value qualifiers, hyper-relational knowledge graph (HKG) that generalizes triple-based knowledge graph (KG) has been attracting research attention recently.…

Artificial Intelligence · Computer Science 2024-11-12 Yu Liu , Shu Yang , Jingtao Ding , Quanming Yao , Yong Li

Finding the dense regions of a graph and relations among them is a fundamental problem in network analysis. Core and truss decompositions reveal dense subgraphs with hierarchical relations. The incremental nature of algorithms for computing…

Social and Information Networks · Computer Science 2018-09-17 Ahmet Erdem Sariyuce , C. Seshadhri , Ali Pinar

The importance of higher-order relations is widely recognized in a large number of real-world systems. However, annotating them is a tedious and sometimes impossible task. Consequently, current approaches for data modelling either ignore…

Machine Learning · Computer Science 2025-06-06 Iulia Duta , Pietro Liò

We generalize the theory of k-core percolation on complex networks to k-core percolation on multiplex networks, where k=(k_a, k_b, ...). Multiplex networks can be defined as networks with a set of vertices but different types of edges, a,…

Disordered Systems and Neural Networks · Physics 2014-10-08 N. Azimi-Tafreshi , J. Gomez-Gardenes , S. N. Dorogovtsev

We study finite-sum nonlinear programs with localized variable coupling encoded by a (hyper)graph. We introduce a graph-compliant decomposition framework that brings message passing into continuous optimization in a rigorous, implementable,…

Optimization and Control · Mathematics 2026-01-19 Kuangyu Ding , Marie Maros , Gesualdo Scutari

Graph-based signal processing techniques have become essential for handling data in non-Euclidean spaces. However, there is a growing awareness that these graph models might need to be expanded into `higher-order' domains to effectively…

Machine Learning · Computer Science 2024-04-15 Mustafa Hajij , Ghada Zamzmi , Theodore Papamarkou , Aldo Guzmán-Sáenz , Tolga Birdal , Michael T. Schaub

The giant $k$-core --- maximal connected subgraph of a network where each node has at least $k$ neighbors --- is important in the study of phase transitions and in applications of network theory. Unlike Erd\H{o}s-R\'enyi graphs and other…

Physics and Society · Physics 2017-01-25 Uttam Bhat , Munik Shrestha , Laurent Hébert-Dufresne

Higher-order interactions provide a nuanced understanding of the relational structure of complex systems beyond traditional pairwise interactions. However, higher-order network analyses also incur more cumbersome interpretations and greater…

Physics and Society · Physics 2026-01-07 Alec Kirkley , Helcio Felippe , Federico Battiston

Communities in networks are commonly considered as highly cohesive subgraphs which are well separated from the rest of the network. However, cohesion and separation often cannot be maximized at the same time, which is why a compromise is…

Social and Information Networks · Computer Science 2018-12-07 Frank Havemann , Jochen Gläser , Michael Heinz

A hypergraph is a set V of vertices and a set of non-empty subsets of V, called hyperedges. Unlike graphs, hypergraphs can capture higher-order interactions in social and communication networks that go beyond a simple union of pairwise…

Data Structures and Algorithms · Computer Science 2012-02-02 Jianhang Gao , Qing Zhao , Wei Ren , Ananthram Swami , Ram Ramanathan , Amotz Bar-Noy

(Hyper)Graph decomposition is a family of problems that aim to break down large (hyper)graphs into smaller sub(hyper)graphs for easier analysis. The importance of this lies in its ability to enable efficient computation on large and complex…

Data Structures and Algorithms · Computer Science 2023-08-31 Marcelo Fonseca Faraj

While network science has become an indispensable tool for studying complex systems, the conventional use of pairwise links often shows limitations in describing high-order interactions properly. Hypergraphs, where each edge can connect…

Physics and Society · Physics 2024-12-20 Zhao Li , Jing Zhang , Jiqiang Zhang , Guozhong Zheng , Weiran Cai , Li Chen

Hypergraphs offer flexible and robust data representations for many applications, but methods that work directly on hypergraphs are not readily available and tend to be prohibitively expensive. Much of the current analysis of hypergraphs…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-28 Xu T. Liu , Jesun Firoz , Sinan Aksoy , Ilya Amburg , Andrew Lumsdaine , Cliff Joslyn , Assefaw H. Gebremedhin , Brenda Praggastis

Many real-world complex systems are characterized by non-pairwise -- higher-order -- interactions among system's units, and can be effectively modeled as hypergraphs. Directed hypergraphs distinguish between source and target sets within…

Physics and Society · Physics 2025-12-17 Quintino Francesco Lotito , Alberto Vendramini , Alberto Montresor , Federico Battiston

Hypergraphs provide an effective modeling approach for modeling high-order relationships in many real-world datasets. To capture such complex relationships, several hypergraph neural networks have been proposed for learning hypergraph…

Machine Learning · Computer Science 2024-04-08 Rongping Ye , Xiaobing Pei , Haoran Yang , Ruiqi Wang

Graph representations of solid state materials that encode only interatomic distance lack geometrical resolution, resulting in degenerate representations that may map distinct structures to equivalent graphs. Here we propose a hypergraph…

Materials Science · Physics 2024-11-20 Alexander J. Heilman , Weiyi Gong , Qimin Yan

Network scientists have shown that there is great value in studying pairwise interactions between components in a system. From a linear algebra point of view, this involves defining and evaluating functions of the associated adjacency…

Social and Information Networks · Computer Science 2021-08-25 Francesco Tudisco , Desmond J. Higham

Large networks are useful in a wide range of applications. Sometimes problem instances are composed of billions of entities. Decomposing and analyzing these structures helps us gain new insights about our surroundings. Even if the final…