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This study employs micro-computed tomography (micro-CT) to unravel the geometrical intricacies of the rat urinary bladder wall during various states of ex-vivo filling, contrasting markedly with the commonly held idealizations of uniform…

Medical Physics · Physics 2024-06-03 Fatemeh Azari , Anne M. Robertson , Lori A. Birder

Dynamic volumetric MRI provides valuable information on in vivo motion and biomechanics, with applications spanning cardiac, musculoskeletal, or pulmonary imaging, amongst others. Developing reconstruction methods for time-resolved…

Accurate three-dimensional (3D) reconstruction of cardiac chamber motion from time-resolved medical imaging modalities is of growing interest in both the clinical and biomechanical fields. Despite recent advancement, the cardiac motion…

Medical Physics · Physics 2025-04-18 Francesco Capuano , Yue-Hin Loke , Ibrahim Yildiran , Laura Olivieri , Elias Balaras

Two-dimensional (2D) freehand ultrasonography is one of the most commonly used medical imaging modalities, particularly in obstetrics and gynaecology. However, it only captures 2D cross-sectional views of inherently 3D anatomies, losing…

Image and Video Processing · Electrical Eng. & Systems 2024-04-17 Mark C. Eid , Pak-Hei Yeung , Madeleine K. Wyburd , João F. Henriques , Ana I. L. Namburete

We propose a framework to jointly determine the deformation parameters and reconstruct the unknown volume in electron cryotomography (CryoET). CryoET aims to reconstruct three-dimensional biological samples from two-dimensional projections.…

Image and Video Processing · Electrical Eng. & Systems 2023-10-17 Valentin Debarnot , Sidharth Gupta , Konik Kothari , Ivan Dokmanic

The three-dimensional Time-Resolved Lagrangian Particle Tracking (3D TR-LPT) technique has recently advanced flow diagnostics by providing high spatiotemporal resolution measurements under the Lagrangian framework. To fully exploit its…

Fluid Dynamics · Physics 2023-08-21 Lanyu Li , Zhao Pan

Objective: Clinical implementation of deformable image registration (DIR) requires voxel-based spatial accuracy metrics such as manually identified landmarks, which are challenging to implement for highly mobile gastrointestinal (GI)…

This paper aims to create a deep learning framework that can estimate the deformation vector field (DVF) for directly registering abdominal MRI-CT images. The proposed method assumed a diffeomorphic deformation. By using topology-preserved…

Computer Vision and Pattern Recognition · Computer Science 2024-05-07 Yang Lei , Luke A. Matkovic , Justin Roper , Tonghe Wang , Jun Zhou , Beth Ghavidel , Mark McDonald , Pretesh Patel , Xiaofeng Yang

Digital elevation modeling of planetary surfaces is essential for studying past and ongoing geological processes. Wide-angle imagery acquired during spacecraft descent promises to offer a low-cost option for high-resolution terrain…

Computer Vision and Pattern Recognition · Computer Science 2026-04-16 Melonie de Almeida , George Brydon , Divya M. Persaud , John H. Williamson , Paul Henderson

High-quality 3D reconstruction of pulmonary segments plays a crucial role in segmentectomy and surgical planning for the treatment of lung cancer. Due to the resolution requirement of the target reconstruction, conventional deep…

Graphics · Computer Science 2025-12-16 Kangxian Xie , Yufei Zhu , Kaiming Kuang , Li Zhang , Hongwei Bran Li , Mingchen Gao , Jiancheng Yang

Bronchoscopic navigation relies on registering endoscopic video to a preoperative CT scan, but respiratory motion deforms the airway by 5-20 mm, creating CT-to-body divergence that limits localization accuracy. In practice, this is…

Computer Vision and Pattern Recognition · Computer Science 2026-05-01 Andrea Dunn Beltran , Daniel Rho , Aarav Mehta , Xinqi Xiong , Raúl San José Estépar , Ron Alterovitz , Marc Niethammer , Roni Sengupta

Three-dimensional ultrasound enables real-time volumetric visualization of anatomical structures. Unlike traditional 2D ultrasound, 3D imaging reduces reliance on precise probe orientation, potentially making ultrasound more accessible to…

Image and Video Processing · Electrical Eng. & Systems 2026-05-05 Tristan S. W. Stevens , Oisín Nolan , Oudom Somphone , Jean-Luc Robert , Ruud J. G. van Sloun

In this paper, we propose an enhanced 3D myocardial strain estimation procedure, which combines complementary displacement information from multiple orientations of a single imaging modality (untagged CMR SSFP images). To estimate…

Image and Video Processing · Electrical Eng. & Systems 2020-12-01 Mohamed Abdelkhalek , Heba Aguib , Mohamed Moustafa , Khalil Elkhodary

In in-utero MRI, motion correction for fetal body and placenta poses a particular challenge due to the presence of local non-rigid transformations of organs caused by bending and stretching. The existing slice-to-volume registration (SVR)…

Confidence in the results is a key ingredient to improve the adoption of machine learning methods by clinicians. Uncertainties on the results have been considered in the literature, but mostly those originating from the learning and…

Computer Vision and Pattern Recognition · Computer Science 2025-01-22 Maxime Di Folco , Gabriel Bernardino , Patrick Clarysse , Nicolas Duchateau

Methods of three-dimensional deconvolution (3DD) or volumetric deconvolution of optical complex-valued wavefronts diffracted by 3D samples with the 3D point spread function are presented. Particularly, the quantitative correctness of the…

Optics · Physics 2022-01-11 Tatiana Latychevskaia

We introduce a novel unsupervised approach to reconstructing a 3D volume from only two planar projections that exploits a previous\-ly-captured 3D volume of the patient. Such volume is readily available in many important medical procedures…

Computer Vision and Pattern Recognition · Computer Science 2025-06-26 Alexandre Cafaro , Amaury Leroy , Guillaume Beldjoudi , Pauline Maury , Charlotte Robert , Eric Deutsch , Vincent Grégoire , Vincent Lepetit , Nikos Paragios

Human body is a complex dynamic system composed of various sub-dynamic parts. Especially, thoracic and abdominal organs have complex internal shape variations with different frequencies by various reasons such as respiration with fast…

Image and Video Processing · Electrical Eng. & Systems 2021-03-10 Seyoun Park , Elliot K. Fishman , Alan L. Yuille

Three-dimensional (3D) freehand ultrasound (US) is a widely used imaging modality that allows non-invasive imaging of medical anatomy without radiation exposure. Surface reconstruction of US volume is vital to acquire the accurate…

We introduce a new problem of retrieving 3D models that are deformable to a given query shape and present a novel deep deformation-aware embedding to solve this retrieval task. 3D model retrieval is a fundamental operation for recovering a…

Computer Vision and Pattern Recognition · Computer Science 2020-08-03 Mikaela Angelina Uy , Jingwei Huang , Minhyuk Sung , Tolga Birdal , Leonidas Guibas