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Gene set analysis, a popular approach for analyzing high-throughput gene expression data, aims to identify sets of related genes that show significantly enriched or depleted expression patterns between different conditions. In the last…

Large, labeled datasets have driven deep learning methods to achieve expert-level performance on a variety of medical imaging tasks. We present CheXpert, a large dataset that contains 224,316 chest radiographs of 65,240 patients. We design…

Modern machine learning datasets can have biases for certain representations that are leveraged by algorithms to achieve high performance without learning to solve the underlying task. This problem is referred to as "representation bias".…

Computer Vision and Pattern Recognition · Computer Science 2019-04-18 Yi Li , Nuno Vasconcelos

We introduce a large-scale dataset for instruction-guided vector image editing, consisting of over 270,000 pairs of SVG images paired with natural language edit instructions. Our dataset enables training and evaluation of models that modify…

Machine Learning · Computer Science 2025-06-23 Josef Kuchař , Marek Kadlčík , Michal Spiegel , Michal Štefánik

In the currently debated context of using clusters of galaxies as cosmological probes, the need for well-defined cluster samples is critical. The XXL Survey has been specifically designed to provide a well characterised sample of some 500…

Cardiac magnetic resonance imaging (CMR) has emerged as a valuable diagnostic tool for cardiac diseases. However, a limitation of CMR is its slow imaging speed, which causes patient discomfort and introduces artifacts in the images. There…

In this work, we describe a method for large-scale 3D cell-tracking through a segmentation selection approach. The proposed method is effective at tracking cells across large microscopy datasets on two fronts: (i) It can solve problems…

Computer Vision and Pattern Recognition · Computer Science 2024-04-15 Jordão Bragantini , Merlin Lange , Loïc Royer

Post-approval safety surveillance of medical products using observational healthcare data can help identify safety issues beyond those found in pre-approval trials. When testing sequentially as data accrue, maximum sequential probability…

Methodology · Statistics 2022-07-07 Martijn J. Schuemie , Fan Bu , Akihiko Nishimura , Marc A. Suchard

The widespread diffusion of synthetically generated content is a serious threat that needs urgent countermeasures. As a matter of fact, the generation of synthetic content is not restricted to multimedia data like videos, photographs or…

RNA sequencing (RNA-seq) is the conventional genome-scale approach used to capture the expression levels of all detectable genes in a biological sample. This is now regularly used for population-based studies designed to identify genetic…

Genomics · Quantitative Biology 2026-05-25 Christopher Thron , Farhad Jafari

With recent advances in computer vision and graphics, it is now possible to generate videos with extremely realistic synthetic faces, even in real time. Countless applications are possible, some of which raise a legitimate alarm, calling…

Computer Vision and Pattern Recognition · Computer Science 2018-03-28 Andreas Rössler , Davide Cozzolino , Luisa Verdoliva , Christian Riess , Justus Thies , Matthias Nießner

You measure the value of a quantity x for a number of systems (cells, molecules, people, chunks of metal, DNA vectors, etc.). You repeat the whole set of measures in different occasions or assays, which you try to design as equal to one…

Quantitative Methods · Quantitative Biology 2013-11-04 Pablo Echenique-Robba , María Alejandra Nelo-Bazán , José A. Carrodeguas

Generative models are prone to hallucinations: plausible but incorrect structures absent in the ground truth. This issue is problematic in image restoration for safety-critical domains such as medical imaging, industrial inspection, and…

Computer Vision and Pattern Recognition · Computer Science 2025-12-04 Seunghoi Kim , Henry F. J. Tregidgo , Chen Jin , Matteo Figini , Daniel C. Alexander

Charts are essential to data analysis, transforming raw data into clear visual representations that support human decision-making. Although current vision-language models (VLMs) have made significant progress, they continue to struggle with…

High-resolution and variable-shape images have not yet been properly addressed by the AI community. The approach of down-sampling data often used with convolutional neural networks is sub-optimal for many tasks, and has too many drawbacks…

Computer Vision and Pattern Recognition · Computer Science 2020-09-30 Ferran Parés , Dario Garcia-Gasulla , Harald Servat , Jesús Labarta , Eduard Ayguadé

Remote sensing image retrieval(RSIR), which aims to efficiently retrieve data of interest from large collections of remote sensing data, is a fundamental task in remote sensing. Over the past several decades, there has been significant…

Computer Vision and Pattern Recognition · Computer Science 2018-07-24 Weixun Zhou , Shawn Newsam , Congmin Li , Zhenfeng Shao

The World Wide Web is not only one of the most important platforms of communication and information at present, but also an area of growing interest for scientific research. This motivates a lot of work and projects that require large…

Computer Vision and Pattern Recognition · Computer Science 2021-05-18 Christian Mejia-Escobar , Miguel Cazorla , Ester Martinez-Martin

Qualitative models provide crucial instruments for modelling complex biological systems. While advances in automated reasoning and symbolic encodings have enabled rigorous inference of these models from data, the process remains highly…

Molecular Networks · Quantitative Biology 2026-05-14 Ondřej Huvar , Nikola Beneš , Martin Jonáš , David Šafránek , Samuel Pastva

Computational microscopy, in which hardware and algorithms of an imaging system are jointly designed, shows promise for making imaging systems that cost less, perform more robustly, and collect new types of information. Often, the…

Computer Vision and Pattern Recognition · Computer Science 2024-02-12 Henry Pinkard , Cherry Liu , Fanice Nyatigo , Daniel A. Fletcher , Laura Waller

Imitation learning from large multi-task demonstration datasets has emerged as a promising path for building generally-capable robots. As a result, 1000s of hours have been spent on building such large-scale datasets around the globe.…