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Computational notebooks have gained widespread adoption among researchers from academia and industry as they support reproducible science. These notebooks allow users to combine code, text, and visualizations for easy sharing of experiments…

Computers and Society · Computer Science 2020-06-23 Sheeba Samuel , Birgitta König-Ries

Recent work identified clarity as one of the top quality attributes that notebook users value, but notebooks lack support for maintaining clarity throughout the exploratory phases of the notebook authoring workflow. We propose always-clear…

Human-Computer Interaction · Computer Science 2026-03-02 Ruanqianqian Huang , Brian Hempel , Yining Cao , James D. Hollan , Haijun Xia , Sorin Lerner

Jupyter notebooks facilitate the bundling of executable code with its documentation and output in one interactive environment, and they represent a popular mechanism to document and share computational workflows. The reproducibility of…

Digital Libraries · Computer Science 2023-08-16 Sheeba Samuel , Daniel Mietchen

The scarcity of high-quality public log datasets has become a critical bottleneck in advancing log-based anomaly detection techniques. Current datasets exhibit three fundamental limitations: (1) incomplete event coverage, (2) artificial…

Software Engineering · Computer Science 2025-04-17 Xinyu Li , Yingtong Huo , Chenxi Mao , Shiwen Shan , Yuxin Su , Dan Li , Zibin Zheng

Accurate and scalable cell type annotation remains a challenge in single-cell transcriptomics, especially when datasets exhibit strong batch effects or contain previously unseen cell populations. Here we introduce SpikGPT, a hybrid deep…

Quantitative Methods · Quantitative Biology 2025-12-04 Min Huang , Rishikesan Kamaleswaran

Python's dynamic typing system offers flexibility and expressiveness but can lead to type-related errors, prompting the need for automated type inference to enhance type hinting. While existing learning-based approaches show promising…

Software Engineering · Computer Science 2024-08-14 Chong Wang , Jian Zhang , Yiling Lou , Mingwei Liu , Weisong Sun , Yang Liu , Xin Peng

Multi-turn RAG systems often face queries with colloquial omissions and ambiguous references, posing significant challenges for effective retrieval and generation. Traditional query rewriting relies on human annotators to clarify queries,…

Information Retrieval · Computer Science 2025-09-29 JiaYing Zheng , HaiNan Zhang , Liang Pang , YongXin Tong , ZhiMing Zheng

Despite the significant progress made by transformer models in machine reading comprehension tasks, they still fall short in handling complex reasoning tasks due to the absence of explicit knowledge in the input sequence. To address this…

Computation and Language · Computer Science 2024-01-17 Shima Foolad , Kourosh Kiani

High-quality exploratory data analysis (EDA) is essential in the data science pipeline, but remains highly dependent on analysts' expertise and effort. While recent LLM-based approaches partially reduce this burden, they struggle to…

Human-Computer Interaction · Computer Science 2026-02-20 Yi Shan , Yixuan He , Zekai Shao , Kai Xu , Siming Chen

Pluggable type systems allow programmers to extend the type system of a programming language to enforce semantic properties defined by the programmer. Pluggable type systems are difficult to deploy in legacy codebases because they require…

Software Engineering · Computer Science 2025-10-06 Kazi Amanul Islam Siddiqui , Martin Kellogg

Effective code documentation is essential for collaboration, comprehension, and long-term software maintainability, yet developers often neglect it due to its repetitive nature. Automated documentation generation has evolved from heuristic…

Software Engineering · Computer Science 2026-02-10 Mojtaba Mostafavi Ghahfarokhi , Hamed Jahantigh , Alireza Asadi , Abbas Heydarnoori

In this paper, we present a novel paradigm to enhance the ability of object detector, e.g., expanding categories or improving detection performance, by training on synthetic dataset generated from diffusion models. Specifically, we…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Chengjian Feng , Yujie Zhong , Zequn Jie , Weidi Xie , Lin Ma

Computational notebooks (e.g., Jupyter, Google Colab) are widely used for interactive data science and machine learning. In those frameworks, users can start a session, then execute cells (i.e., a set of statements) to create variables,…

Databases · Computer Science 2025-03-12 Zhaoheng Li , Pranav Gor , Rahul Prabhu , Hui Yu , Yuzhou Mao , Yongjoo Park

Language models have shown remarkable proficiency in code generation; nevertheless, ensuring type correctness remains a challenge. Although traditional methods, such as constrained decoding, alleviate this problem by externally rejecting…

Programming Languages · Computer Science 2026-02-09 Zhechong Huang , Zhao Zhang , Ruyi Ji , Tingxuan Xia , Qihao Zhu , Qinxiang Cao , Zeyu Sun , Wiggin Zhou , Yingfei Xiong

Inferring the types of API elements in incomplete code snippets (e.g., those on Q&A forums) is a prepositive step required to work with the code snippets. Existing type inference methods can be mainly categorized as constraint-based or…

Software Engineering · Computer Science 2024-02-16 Zhixiang Chen , Anji Li , Neng Zhang , Jianguo Chen , Yuan Huang , Zibin Zheng

In light of the growing interest in type inference research for Python, both researchers and practitioners require a standardized process to assess the performance of various type inference techniques. This paper introduces TypeEvalPy, a…

Software Engineering · Computer Science 2024-01-03 Ashwin Prasad Shivarpatna Venkatesh , Samkutty Sabu , Jiawei Wang , Amir M. Mir , Li Li , Eric Bodden

Large language models (LLMs) have shown great promise in automating data science workflows, but existing models still struggle with multi-step reasoning and tool use, which limits their effectiveness on complex data analysis tasks. To…

Artificial Intelligence · Computer Science 2025-12-04 Shuocheng Li , Yihao Liu , Silin Du , Wenxuan Zeng , Zhe Xu , Mengyu Zhou , Yeye He , Haoyu Dong , Shi Han , Dongmei Zhang

There has been growing interest in automatically predicting missing type annotations in programs written in Python and JavaScript. While prior methods have achieved impressive accuracy when predicting the most common types, they often…

Software Engineering · Computer Science 2023-03-20 Jiayi Wei , Greg Durrett , Isil Dillig

We introduce a new compile-time notion of type subsumption based on type simulation. We show how to apply this static subsumption relation to support a more intuitive, object oriented approach to generic programming of reusable, high…

Programming Languages · Computer Science 2011-02-17 Wouter Kuijper , Michael Weber

Given a patent document, identifying distinct semantic annotations is an interesting research aspect. Text annotation helps the patent practitioners such as examiners and patent attorneys to quickly identify the key arguments of any…

Machine Learning · Computer Science 2021-11-19 Renukswamy Chikkamath , Vishvapalsinhji Ramsinh Parmar , Christoph Hewel , Markus Endres